UFO06268.5prime Sequence
1115 bp (969 high quality bases) assembled on 2009-08-20
> UFO06268.5prime
CAGTCGACATGGCGCATAATACGCGCAACTCCGATTTATCGCAGATAGCT
GTCAATGCCAACAATATACCCGATGACAGCGTCGATTGTGGCATCAAGGG
TCTGGGATGGTGTCGCGGTCCCGGATGCCAGAAATATGCCCGACTGCGCA
CCTTCATCCTGGTACTGGCCATCTCGGGAACCCTACAGGGCGCCTGCGAA
TCCTACTTCCGCGTGTCGGCCAAACAGGCTTCCTTTCAGTTCGGTTGGAA
TCCACTGATTGTGGATTGGCTGCTGGTGGCCAGTGGATTATTCCAGGCGG
TCTTTGCGTTGGCTTTCGCCTACTGGGCGGACGTCTATCATCCCATCAAA
TGGCTGGTGGGAACTCTGATGCTGCAGGCGGTCACCTGTGTGGTGGCTGT
GATTCCCTCCATTATGAACTTTGCCGATGGCAACCAGGCAAAGGATGCTC
TGCTGGATGCCAATATGTGCGCCACATCCTTGGCACAGTTCCAAAGGCTC
ACACTGACCGAGGCCCAGAGCAGCAGCCTAACCCTTGCGATGCTCTTCGT
TCTTCAGCTGGCCTTGGGAATGGGAGGATTGGCCTACTACACGCTGGGGG
TTAGCTACATCGACGACAACTCCCTGTCCCAAGATAGTCCGGCGGTGATA
GGTGCTGCTCTGGCTGCGCGCGTATTTGGCCAGCAGGCTGGATCCTTCCT
AGTGCTTGGCGTTGGTCTCACCCATGTGGGTTGGTGGCTCGGTTGGGTGA
TACTGGCACCCTTCATTTTCGTGGGCGCTGTGCTCCTGGGACTGTTTCCC
AAACGACTGCCAAAGACCGTCATTCACCAGGCGGCGCAACGGATCATTGA
GCAGTCCAGCATGCGTAGGTTTGGCAGCCAGTTCTCACATATATGGATGA
CTCCGATTTTGGCCTCTCTGAAGAGGTATTCAATACCGCCTACTGATGTT
CATCTGGTGAGCATCATGTGCGTGCAAGTGGAGTCGTGAACTATGGCCTC
CAGGAGAGAACTATCTGCGAGCAGATTCTTTTGTCCTCAACGAAAGGATG
CTTGGCGGCGATGGAGATCGCATTGTTTCTATTCTCAGCGCAGTATGGCA
TGGATGCTGATAATT
UFO06268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp33Eb-RA | 2743 | CG6417-RA | 179..1266 | 9..1079 | 4955 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12449832..12450451 | 422..1032 | 2610 | 97.7 | Plus |
| 2L | 23513712 | 2L | 12448806..12448995 | 75..264 | 950 | 100 | Plus |
| 2L | 23513712 | 2L | 12449596..12449753 | 264..421 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 12448662..12448728 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:14 has no hits.
UFO06268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:10 Download gff for
UFO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Eb-RA | 177..1253 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:19 Download gff for
UFO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Eb-RA | 179..1255 | 9..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:51 Download gff for
UFO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp33Eb-RA | 179..1255 | 9..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:51 Download gff for
UFO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12448662..12448728 | 9..75 | 100 | -> | Plus |
| 2L | 12448807..12448995 | 76..264 | 100 | -> | Plus |
| 2L | 12449597..12449753 | 265..421 | 100 | -> | Plus |
| 2L | 12449832..12450495 | 422..1070 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:19 Download gff for
UFO06268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12448662..12448728 | 9..75 | 100 | -> | Plus |
| arm_2L | 12448807..12448995 | 76..264 | 100 | -> | Plus |
| arm_2L | 12449597..12449753 | 265..421 | 100 | -> | Plus |
| arm_2L | 12449832..12450495 | 422..1070 | 97 | | Plus |
