UFO06271.5prime Sequence
1083 bp (984 high quality bases) assembled on 2009-08-20
> UFO06271.5prime
CAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAGCAGCTGCC
ACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAAGAGTCGCC
AAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACACGACGCCCG
CCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACGAGCGCATT
CTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGACAGAAGGC
GGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGGCAATGTGT
GGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCTTCCTGGTG
CCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTCTACATGGA
GCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCATCTGGAAGC
GCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCCTAATCGAC
ATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCGGTATACTA
CCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTGCGATAATC
CCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACTTCACGGAA
CTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTTTTGGAGAG
CTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCCCACGCTGG
CACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCCTGTGGAAG
GAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTGGCTCCTTAT
GTGGTGCTAATCATCCTGCTGGTTAGAGGAGTTTCCCTGCCCGGGCGGAC
GAGGGCATCAGTACTACCTAACCCCGGAGTGCACAAACTGAAGAACTCAA
AGTCTGGATCGACGCGCATCCAGATTTTCTTTTTCCTGGCCCGAATCGAC
CTGCTGCCTGTCCAGCTACACAGTCACAACAACTGCTATCGCGATGCTCT
CATAACAGACAGACTCACTGCTGACAGCTCCTG
UFO06271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SerT-RB | 3725 | CG4545-RB | 1000..2063 | 9..1053 | 4830 | 97.9 | Plus |
| SerT-RA | 3183 | CG4545-RA | 458..1521 | 9..1053 | 4830 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24408962..24409241 | 472..193 | 1400 | 100 | Minus |
| 2R | 25286936 | 2R | 24407098..24407385 | 965..683 | 1190 | 98.3 | Minus |
| 2R | 25286936 | 2R | 24407441..24407654 | 683..470 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 24409387..24409572 | 194..9 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:16 has no hits.
UFO06271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:18 Download gff for
UFO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SerT-RA | 449..1532 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:27 Download gff for
UFO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SerT-RA | 452..1535 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:10 Download gff for
UFO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SerT-RA | 452..1535 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:10 Download gff for
UFO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24406982..24407385 | 683..1067 | 93 | <- | Minus |
| 2R | 24407442..24407652 | 472..682 | 100 | <- | Minus |
| 2R | 24408963..24409239 | 195..471 | 100 | <- | Minus |
| 2R | 24409387..24409578 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:27 Download gff for
UFO06271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20294505..20294908 | 683..1067 | 93 | <- | Minus |
| arm_2R | 20294965..20295175 | 472..682 | 100 | <- | Minus |
| arm_2R | 20296486..20296762 | 195..471 | 100 | <- | Minus |
| arm_2R | 20296910..20297101 | 1..194 | 97 | | Minus |
