UFO06272.5prime Sequence
1076 bp (975 high quality bases) assembled on 2009-08-20
> UFO06272.5prime
CAGTCGACATGATCCGTGGAATCTTGCTCCTGCTGCTGGGAACCACCAGG
TTCAGCCCCATCCAGTGCATCTCCAATGACGTGTACTTCAAGATGTTTTC
GCAACAGGCGCCGCCGGAGGATCCGTGCTACAATAAAGCGCACGAGCCAC
GCGCCTGCATTCCGGACTTTGTGAACGCCGCCTACGATGCTCCAGTGGTG
GCCAGTTCCACGTGCGGATCGTCGGGTGCGCAGCGATATTGCGAGTACCA
GGATCACGAGCGCTCCTGCCACACCTGCGACATGACGGATCCGTTGCGCA
GCTTTCCAGCCCGCTCGCTGACCGATTTGAATAACTCGAATAATGTGACC
TGCTGGCGCAGTGAGCCGGTGACCGGAAGTGGGGACAACGTAACCTTGAC
CCTCTCGCTGGGCAAGAAGTTCGAGCTGACCTATGTGATCCTACAGCTGT
GCCCGCATGCTCCGCGTCCCGATTCGATGGTGATCTACAAGAGCACCGAT
CACGGGCTCAGTTGGCAGCCATTCCAGTTCTTTAGCTCCCAGTGCCGCCG
GCTTTTCGGACGTCCCGCCCGCCAATCCACTGGACGCCACAATGAGCACG
AGGCCCGCTGCAGCGATGTCACCAGGCCACTGGTCTCCAGAATTGCCTTC
AGCACACTGGAGGGACGCCCATCGTCACGGGATCTGGACTCATCGCCGGT
GCTGCAGGACTGGGTGACGGCCACCGATATCCGGGTGGTGTTCCATCGCC
TTCAACGCCCCGATCCGCAGCCCTGCTCTCATTGGAAGCCGGAGGAGCAA
CGGATTTGGCCAGCGGCAAGTACAGTGTGCCCCTGGCCAATGGACCCGCT
GGCAATAATATTGAGCGAATCTCGGTGGGGATGTGGCAACATCCGGCAGT
GATTGCACTATGCCATCTCTGACTTTTCGTGGGCGACGGTGCAAGTGCAA
TGACACGCCTCCAGTGTTCCACGGACGCCAGTGGCAGCTGACTGCGGTGC
AGCCACAATACCGCTGTGGATGCACGCTGCAGCATCCACCTCGATCGTCC
ATGGCAGCCCCGCCAAGGAAGCAATG
UFO06272.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-RC | 3339 | CG18657-RC | 683..1772 | 7..1072 | 4870 | 97.6 | Plus |
| NetA-RB | 3249 | CG18657-RB | 589..1678 | 7..1072 | 4870 | 97.6 | Plus |
| NetA-RA | 3245 | CG18657-RA | 589..1678 | 7..1072 | 4870 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14652227..14653246 | 1016..7 | 4600 | 99 | Minus |
| X | 23542271 | X | 14747315..14747424 | 752..643 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:40 has no hits.
UFO06272.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:17 Download gff for
UFO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 583..1680 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:30 Download gff for
UFO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 586..1683 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:13 Download gff for
UFO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 586..1683 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:13 Download gff for
UFO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14652152..14653249 | 1..1076 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:30 Download gff for
UFO06272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14546185..14547282 | 1..1076 | 97 | | Minus |
