UFO06273.5prime Sequence
1083 bp (979 high quality bases) assembled on 2009-08-20
> UFO06273.5prime
CAGTCGACATGAGATTAGCGTTAATATTGGGCACTCTTAGTGCTATAGTG
TGCTTGGCCAGCAGCTTGAGCCAGTCAGAGGCGAGTGGCTCAAAGGGCAA
TGGATTTCCCAAAAAGGTTACCACCCTGAAGAAGCGACCAACAAAAACGC
CGACCACAGTTCCGATTTCCATCAGCAGAGCAACCACTTTGAAGCCCAGT
AAGCCACGCGTGAAGATCGGCACATCGGCAACCACCAAGAGCCCCACGAA
AGCACCGGCCTTAACCGAGACATTTGGCAATCTGCCGGCGGATGACCTGG
AATTCATTAAGGAGCTGGACAAGCAGTTCAAACTGCACGGAAACAAGATC
AAGATCAAGGTGGAGAGGGATAATTCCACGAGTAGCGGCGGCAAGAACAG
CAAGAGGACCATCGAGGGGGATTTGGGATACGGCTACTCGCATCCTGGCT
ATGATTACACGCCGCCCAAGTTCATGTTCTATCCATACTCACAGCATGAT
ATTCCCTCGGGCTTTGCCCTTCCACAGCCACATCCGGAGGAGCAGGAGGA
GGAGGCACACCAGCCGGCAATGCAACATCATCACAATCACGAGCAAGTGA
CCAGCGTGACCATTGAGCCCTCGTACTCCTACGAGCTTAAGCCCCAGACC
AGCTATGAAACCCAACCGCAGCACACAGCTCCCGAGCAGCCGCAGATTGA
TCTGCCCCAGGATGAAGCGGAAAGTCCCAGTGGTGCAGGTGGTTCCAGTG
GCCACGGGGGATATCAGGAGCCCGTCATTGTCTTGCGTATTCCAGGACCC
GCCAAGTACGCCGCCCATTTGCAGACCCTTCTCCAGCAATATCTGGAGAT
CAGAGCGGCCCAGTACCTCAGCTTGCTCCAGGAGGCCGATCAGCAGCAAC
AACACAGCAGCATCAGCATGTGATCCTTCGCAGCATATGGACCACCAGAC
GGCACCTACCATCAGAAGTCAGCTACGCCCACAACTGGCACCCACGCCGG
CACCCGTCAGTACGCACCCATCGATGATGTCTCCAGCTACAGGTCGCCAC
AGGCAAAGCTGCAGCTGCAGCAGAACAATTTGG
UFO06273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11380-RB | 2801 | CG11380-RB | 381..1472 | 4..1079 | 5045 | 98.3 | Plus |
| CG11380-RA | 2704 | CG11380-RA | 284..1375 | 4..1079 | 5045 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1194663..1195277 | 427..1032 | 2665 | 98.2 | Plus |
| X | 23542271 | X | 1194197..1194595 | 29..427 | 1995 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2442..2515 | 522..598 | 117 | 63.6 | Plus |
UFO06273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:08 Download gff for
UFO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 275..1372 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:14 Download gff for
UFO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 281..1378 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:21 Download gff for
UFO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11380-RA | 281..1378 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:21 Download gff for
UFO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1194198..1194595 | 30..427 | 100 | -> | Plus |
| X | 1194664..1195334 | 428..1083 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:14 Download gff for
UFO06273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1088231..1088628 | 30..427 | 100 | -> | Plus |
| arm_X | 1088697..1089367 | 428..1083 | 97 | | Plus |
