UFO06276.5prime Sequence
1136 bp (1014 high quality bases) assembled on 2009-08-20
> UFO06276.5prime
CAGTCGACATGGACGTATCCGCCTCCACGTCGTTTGAATCCTCGCCGGAC
AAGAGAAACAGCATCTATGTGGGCGACAACACTTTCTACGACAGCGCCCT
GGATCACCAGCTGTCCACCACGGCCTACAAGTCGTGCAATGAGAGCCTTA
TCAGCGAACTCAGCCAGAATCCTCTTGGCCCCTCGAACTCGGCCAACAAG
ACAGCTAGTGCGGAATTTGGCAATGAATCCGCTGCATTCAAGCCCCTCGG
ATCCCCGGCAGCTTTCAACAATGCCACGCCAGCGCTAAATGCCAGCATGC
TGCTGATTCAGTCGGAGAGCACGGACACTAATACCTCGCAGGAGGAGGTG
GACCCCAAGTCACAACTGGCCAACAAGACAATATTCAAGACGGATAATCC
CAACCTGTCAATTATAGAAATTAACGATAACTCGATTAAGGAGGAGGACC
TCGAGAAGGTGGTGCTGGTCGAGGGCGACAGTGTGAAGAATCTTTTGAAG
AAGTCGCCCAGCAAGGAGGCTTCGGCAAACGCTGACAAAAGACGCCGCAA
GGAATCCCTACTGCACACGAGCAAACAAAAATTGGACATTTCCATCGCTG
AAGCTTCGGCAGCCGCCGATGGTGATGGCGAGAAGCGGGATCTGGTGTCG
GTCATAGATCAGCCGCAGACCAAGCGCGAAATCACAATTTACGATACCAT
TGAGGAGTTCGAACAGAATCTGCCGTCGACGGTGACGCTGTTGAACACGC
CCTTCGGCAGCAAGGTATATCTTGTGGGCACGGCCCACTTCAGCGAGGAG
TCGCAAATGACGTCTCTTATGTCATTCGCAATGTCCGTCCAGATGTGGTA
ATGGGTGGGAGTTGTGTCCATCGCGCATACACATCCTTAAGCTCGATGAA
AAGACCCTGCTGGAGGAAGCCAAAGCATCAATATTCCCAGATTCGAGGAA
TCCTGCCCACGCACGGCTACATCAATGGCATCTTTTTCTTCCTACTGCTG
CAGATGGAGCGCTCAGATCGCCAGGACCTGGCATGGCGCCGGTGGGAATT
CGCCGTGCCTCAAGAAATACCAAGCTGCCGTGCATCTTACATCTAGGGGA
TCGCCCATCCCATCCACTTAACGGCTCTGCCGCTTG
UFO06276.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-RB | 2795 | CG12360-RB | 178..1322 | 8..1135 | 5055 | 97.3 | Plus |
| CG12360-RA | 2158 | CG12360-RA | 349..1493 | 8..1135 | 5055 | 97.3 | Plus |
| CG12360-RC | 1309 | CG12360-RC | 178..311 | 8..141 | 670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13028203..13028885 | 822..141 | 3350 | 99.7 | Minus |
| 3R | 32079331 | 3R | 13029919..13030052 | 141..8 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 13028029..13028146 | 939..821 | 470 | 96.7 | Minus |
| 3R | 32079331 | 3R | 13027885..13027968 | 1023..939 | 345 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:56:35 has no hits.
UFO06276.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:08 Download gff for
UFO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RB | 172..1309 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:23 Download gff for
UFO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 343..1480 | 1..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:22 Download gff for
UFO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 343..1480 | 1..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:22 Download gff for
UFO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13028027..13028146 | 821..940 | 96 | <- | Minus |
| 3R | 13028205..13028884 | 142..820 | 99 | <- | Minus |
| 3R | 13029919..13030058 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:23 Download gff for
UFO06276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8853749..8853868 | 821..940 | 96 | <- | Minus |
| arm_3R | 8853927..8854606 | 142..820 | 99 | <- | Minus |
| arm_3R | 8855641..8855780 | 1..141 | 97 | | Minus |
