UFO06279.5prime Sequence
1110 bp (1000 high quality bases) assembled on 2009-08-20
> UFO06279.5prime
CAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTGGTTTTTAT
TTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAAAAATCCAG
CAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGAGAAGATCG
AGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACGACCGCCTG
GAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACCATTTTGAA
CCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAATCGAGGAAC
TTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAAAATCCATA
ATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAAGATTCCGA
TGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATCATCCGACA
GCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGCTTAGATCC
AAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGTCAAATGAG
CGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCATCCGCTCCC
AACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAGATGATGAT
ATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAGGATAAACG
CAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGAATCAGCTA
GACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGCAGAAGCGC
CCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACTTCAAGTCGC
CAGAAAAGGAGTCAAACCTCCAACATCTACTACTTCATCCGAAACTTTGG
TTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAATCACGTTCAGCC
TCACCAGATGTGATACCTATACAAACGAACCCGAAACACTGCTGATCAGC
GACAGTACGATGATGAGCCCAAAAGAAGAAAACTGAACACTCCACTAAGC
AAGTCGATCGAACCCCAGCCCATCGTGAGCATAGAGGAATGGCGGTGACC
GAAGCGCTAG
UFO06279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32176-RA | 1928 | CG32176-RA | 8..1076 | 10..1065 | 4990 | 98.4 | Plus |
| CG12229-RA | 1960 | CG12229-RA | 55..108 | 534..481 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17436513..17436991 | 535..1009 | 2195 | 99.2 | Plus |
| 3L | 28110227 | 3L | 17433875..17434137 | 10..272 | 1315 | 100 | Plus |
| 3L | 28110227 | 3L | 17434187..17434333 | 271..417 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 17434392..17434456 | 416..480 | 325 | 100 | Plus |
| 3L | 28110227 | 3L | 17436324..17436377 | 481..534 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc4-element | 2791 | Doc4-element DOC4 2791bp | 774..850 | 202..281 | 122 | 66.7 | Plus |
UFO06279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:06 Download gff for
UFO06279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32176-RA | 1..1082 | 7..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:12 Download gff for
UFO06279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32176-RA | 3..1084 | 2..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:45 Download gff for
UFO06279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32176-RA | 3..1084 | 2..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:45 Download gff for
UFO06279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17433870..17434137 | 2..272 | 98 | -> | Plus |
| 3L | 17434189..17434333 | 273..417 | 100 | -> | Plus |
| 3L | 17434394..17434456 | 418..480 | 100 | -> | Plus |
| 3L | 17436324..17436377 | 481..534 | 100 | -> | Plus |
| 3L | 17436513..17437064 | 535..1071 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:12 Download gff for
UFO06279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17427289..17427433 | 273..417 | 100 | -> | Plus |
| arm_3L | 17427494..17427556 | 418..480 | 100 | -> | Plus |
| arm_3L | 17429424..17429477 | 481..534 | 100 | -> | Plus |
| arm_3L | 17426970..17427237 | 2..272 | 98 | -> | Plus |
| arm_3L | 17429613..17430164 | 535..1071 | 96 | | Plus |
