UFO06280.5prime Sequence
1131 bp (1022 high quality bases) assembled on 2009-08-20
> UFO06280.5prime
CAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATATCCGTGGTG
ATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGACGGAAATGC
TGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGATCCACTGC
CGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCATTTGCTCC
GACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAGAATGGAGG
AAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGGACTCATCG
GGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATGTTTATGTG
GCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATGGCGCCGCT
GGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCAGGATTTCA
AGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCGGTTATGCG
GTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTGGTGCTGCC
AACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCACCAGTATG
ATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCGGCCTACGC
CGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTGGGTCATCT
CATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTTGGCCAACG
AGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATCTGCTGGCC
GACTTGAAGGACGCGGGCAGTGCAATAACTAAAGAAGACCTCAACCAAGC
GCACGCCAAATTGAGTAGCGCCATTGTGATGCCACTGGATGAGTATGATC
TCATTTGACTCCTCCACCTGGAAGTGTCACGTCTCGGCTCATAATGACAT
ACTAAAGGAGTTCTGGCGATCTCAGAGCGACTATGAGCCCACGTCAATCA
TTGATGTCGAGCATGAGTTTGATCGTCAGCGATGCACTGATGATCGCGAG
CGATAGCTTTGTCGATTGACAGTCATGATGCAATCTGGCAGCCATACACA
CACTAACGACAGGTCATGGACTCCTGATCAA
UFO06280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1492-RB | 2289 | CG1492-RB | 128..1129 | 9..997 | 4675 | 98.5 | Plus |
| CG1492-RA | 2000 | CG1492-RA | 128..1129 | 9..997 | 4675 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12011065..12011934 | 963..99 | 4085 | 99.3 | Minus |
| X | 23542271 | X | 12011990..12012084 | 103..9 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:07 has no hits.
UFO06280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:05 Download gff for
UFO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1492-RA | 120..1145 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:19 Download gff for
UFO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1492-RA | 122..1147 | 1..1011 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:03 Download gff for
UFO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1492-RA | 122..1147 | 1..1011 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:03 Download gff for
UFO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12011005..12011933 | 100..1011 | 97 | <- | Minus |
| X | 12011994..12012088 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:19 Download gff for
UFO06280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11905038..11905966 | 100..1011 | 97 | <- | Minus |
| arm_X | 11906027..11906121 | 1..99 | 95 | | Minus |
