UFO06281.5prime Sequence
1060 bp (928 high quality bases) assembled on 2009-08-20
> UFO06281.5prime
CAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGGCGCCAGCT
GCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCACGTCGGCG
TCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCAGCAGGCGG
TTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGAACCCCAAC
GTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCCATATATGG
TCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAGCTGCATCG
TCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCGGCGGGCGA
CCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGCTATATGCC
ACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGACCTTAATCT
ACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGGATCGTACA
GAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAATTTGTCAA
GAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGTGGCTCTGC
TCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGGGGGTGGAC
CCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATTACGAAAAA
TGGTCACACGACTGTGATAATCACCACGCATTACATCGACGAGTGTGCCC
AGGCGCATATGATCGGTCTACTGCGTGGTGGAAAAATGCTGGCAGAGGAA
TCGCCGGACTATCTGCGTCAGCAGTATAATGCCGACTCGCTGGAGGATGT
CTTCCTGAAGCTCTCGGTTTTGCAGACATGGGAAAACGCCGCCGATCGTC
GATAGCTCAGGAAATTGTGGACAGTAACGTGCGCGATCTCTAATCCCGCC
TTGTAATGTCGATGAGCAGCATGCGCGAAATTTCCGGCGAGTCGGTGACA
CATTCATTGTCGTGCGCCGGCTCGGATCCGATCAGTACACGGACCGCAGC
TCGGCTGCCT
UFO06281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33970-RC | 3989 | CG33970-RC | 628..1675 | 5..1039 | 4820 | 98.2 | Plus |
| CG33970-RA | 3387 | CG33970-RA | 628..1675 | 5..1039 | 4820 | 98.2 | Plus |
| CG33970-RB | 2072 | CG33970-RB | 70..360 | 762..1039 | 1050 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26349599..26349864 | 402..667 | 1330 | 100 | Plus |
| 3R | 32079331 | 3R | 26331404..26331643 | 5..244 | 1185 | 99.6 | Plus |
| 3R | 32079331 | 3R | 26348914..26349074 | 245..405 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 26355599..26355760 | 761..921 | 760 | 99.4 | Plus |
| 3R | 32079331 | 3R | 26350078..26350173 | 666..761 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 28692548..28692742 | 549..743 | 240 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:49 has no hits.
UFO06281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:04 Download gff for
UFO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33970-RA | 622..1691 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:20 Download gff for
UFO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33970-RA | 625..1694 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:03 Download gff for
UFO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33970-RA | 625..1694 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:03 Download gff for
UFO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26350080..26350173 | 668..761 | 100 | -> | Plus |
| 3R | 26355600..26355909 | 762..1055 | 92 | | Plus |
| 3R | 26331401..26331643 | 1..244 | 98 | -> | Plus |
| 3R | 26348914..26349073 | 245..404 | 100 | -> | Plus |
| 3R | 26349602..26349864 | 405..667 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:20 Download gff for
UFO06281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22157123..22157365 | 1..244 | 98 | -> | Plus |
| arm_3R | 22174636..22174795 | 245..404 | 100 | -> | Plus |
| arm_3R | 22175324..22175586 | 405..667 | 100 | -> | Plus |
| arm_3R | 22175802..22175895 | 668..761 | 100 | -> | Plus |
| arm_3R | 22181322..22181631 | 762..1055 | 92 | | Plus |
