UFO06285.5prime Sequence
1076 bp (964 high quality bases) assembled on 2009-08-20
> UFO06285.5prime
CAGTCGACATGTTGACCCTGTATTACGTGAGTGCCACCGTCCTGCAGTCC
TGGCGCATTCAAAAGGCGTGCTCCAAGATCGCCGAGCACCTCGCGCAGCC
CTCGAGCATCGCCTTCTATACCCTCCAATCGGGCAGCGATGACGGATTCG
ATCCCGCCCTGGCCAGCTCGGAGTTGTGCTGCAATCGGAACGCGGCCAAG
GTCACGGACATCCTGTGGCTGCACGCCAACCAGCGGGGTTGCTGCCTGCG
TCCGCTGCAAACGCTACACATCACGCCTTGGATCAGCTTTCCGCCGGCGC
CCAGTCTGCTTCCCTTCTCCTATGCCGCCGACACGTTAACGCCGGCGTCC
ACGCCCACGGAGGCGGACGTCCCGCGCCAACAACGGGTTTCGCTCTCTGC
CCAAGGGGAGGAGCGGATGCAGCTGCTCCTTGAGGCCGACATAGAGCCAC
TACAGCGGCCCAGCTCCGAGGACACATCAGCAGTACGGCTGGAAGATTAC
GGTAAGCTAATTGCTTGGAAAATAGATTCCCACCTGGCGGTGCTCATCGA
AACAGACGTCGAGCACTTCACGAAACTTTTGATAACGACTTTCTTGAGAA
ATAATTTATGCATTAACGATCAGCTGCCACTTTTGCGGATTGAGTCGGTG
CAACGGGAAGGGGATCCGCAGCCCTTTGAGCTTCTGGCCAAGCATCTGAA
GCGGCAATCCCGCATAAGCGTCGGTCTGGACAAGGATGGATGGAAGAAGC
ACATGGAGGACTTGCGTGCCGTAGGTGTGCTGGCGCACCAGGCCACCGAG
TTCGAGTACCAGAGGAATCGCTCTGAGGGAAGAACGAAATCGGATCCCAC
CACACATGATCAACGCCCGACTTCGGAGCTTTTGGCCAAGCTGTGGCCGT
GGTGGAGCCCACCACAGGCATATCTGTCTCGGCAAGGACGACAGAAGCCT
CGCTCAAAGCCGAGGCCAAGGAACGTCACAAACTTTTCGACTAAAAGCGA
TGCCAACCCGCCCTCTTGCAGAGCGAGGGGCAGCCAGCCCAAGCAAAAGA
TCCAAGTAACGCCACTAGGTGCCATA
UFO06285.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcs-RC | 3991 | CG14670-RC | 362..1435 | 9..1064 | 4895 | 98.1 | Plus |
| Hcs-RA | 3973 | CG14670-RA | 362..1435 | 9..1064 | 4895 | 98.1 | Plus |
| Hcs-RD | 3847 | CG14670-RD | 362..854 | 9..501 | 2465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5475462..5475800 | 150..488 | 1695 | 100 | Plus |
| 3R | 32079331 | 3R | 5476541..5476870 | 646..971 | 1470 | 98.5 | Plus |
| 3R | 32079331 | 3R | 5476305..5476462 | 488..645 | 790 | 100 | Plus |
| 3R | 32079331 | 3R | 5475260..5475401 | 9..150 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:47 has no hits.
UFO06285.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:02 Download gff for
UFO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcs-RA | 354..1394 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:50 Download gff for
UFO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcs-RA | 357..1397 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:57 Download gff for
UFO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcs-RA | 357..1397 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:57 Download gff for
UFO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5475255..5475401 | 1..150 | 97 | -> | Plus |
| 3R | 5475463..5475800 | 151..488 | 100 | -> | Plus |
| 3R | 5476306..5476462 | 489..645 | 100 | -> | Plus |
| 3R | 5476541..5476939 | 646..1032 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:50 Download gff for
UFO06285.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1300977..1301123 | 1..150 | 97 | -> | Plus |
| arm_3R | 1301185..1301522 | 151..488 | 100 | -> | Plus |
| arm_3R | 1302028..1302184 | 489..645 | 100 | -> | Plus |
| arm_3R | 1302263..1302661 | 646..1032 | 96 | | Plus |
