UFO06289.5prime Sequence
1113 bp (998 high quality bases) assembled on 2009-08-20
> UFO06289.5prime
CAGTCGACATGCTGCCTCGGTTCCGTTCCTTTTACGGCAAACTGATCATC
TTCATCCTAGTCGCCCTCTGCTTCATCCTCTACAGCAAGGTGCAGCAGAA
TGGTTCACCAGAGGAGCCACCTGTAGCGCCACTCGTCCGGGCGGCCGCTC
TGCGAGGTCATGGGCGCGAGCGGTTCGAGGCGTATAGCGACAGTGAGAAC
GAGATAGCCCGACCCGCCACCCAGTCGCCGTACGAACAAATAATCCAACT
GGATCTTCAGAAACAGAAGGTGGGACTCGGCGAACAGGGCGTGGCAGTGC
ATCTTTCCGGTGCCGCCAAGGAACGAGGCGATGAGATCTACAAGAAGATT
GCCCTCAACGAGGAGCTAAGCGAGCAGTTGACCTACAACCGGAGTGTCGG
TGACCACCGGAATCCCCTGTGCGCCAAACAGCGCTTTGATTCCGACTCCC
TGCCCACCGCCAGTGTGGTCATCATCTTCTTCAACGAACCCTACTCCGTG
CTGCTGAGGACCGTGCACAGCACTCTGAGCACCTGCAACGAGAAGGCCCT
GAAGGAGATTATTCTGGTGGATGACGGTAGCGACAACGTGGAACTGGGCG
CCAAGCTGGACTACTATGTTCGCACGCGGATTCCCTCGGGGAAGGTCACC
ATTCTGCGTCTCAAGAACCGATTGGGTTTGATTCGTGCCCGATTGGCCGG
AGCGCGAATCGCCACGGGGGGATGTGCTCATCTTCCTGGATGCCCATTGC
GAGGGTAACATTGGCTGGTGCGAGCCACTCCTGCAGCGCATCAAGGAGTC
GCGGACTAGCGTGCTGGTGCCCATTATCGATGTCATCGATGCCAACGACT
TTCAGTACAGCACAAATGGCTACAAATCCTTCCAGGTCGGCGGATTCCAG
TGGAATGGCCACTTTGACTGGATCAATCTGCCGGAGCGGGAGAGCAGCGC
CAGCGACGCGATGCAGCAGGAGCGGGGAGATCTGTCCAGCATACAGTCCA
CATGGCGGCGGACTGTTTGCCATAGATCGTCGCTACTTCTGGGAGTGGGC
AGCTACGACGAACAATGACGGTGGGGTGGTGGACTGGGAAGTCTTTTCCA
TTGGCAGTGGGGA
UFO06289.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T1-RB | 2677 | CG8182-RB | 291..1373 | 7..1081 | 5125 | 98.9 | Plus |
| GalNAc-T1-RA | 2697 | CG8182-RA | 311..1393 | 7..1081 | 5125 | 98.9 | Plus |
| GalNAc-T1-RC | 1789 | CG8182-RC | 66..485 | 670..1081 | 1810 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15512102..15512765 | 7..670 | 3320 | 100 | Plus |
| 2R | 25286936 | 2R | 15513745..15514145 | 670..1065 | 1585 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:27 has no hits.
UFO06289.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:01 Download gff for
UFO06289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RB | 355..1443 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:10 Download gff for
UFO06289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RA | 305..1393 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:37 Download gff for
UFO06289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T1-RA | 305..1393 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:37 Download gff for
UFO06289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15512096..15512765 | 1..670 | 99 | -> | Plus |
| 2R | 15513746..15514164 | 671..1081 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:10 Download gff for
UFO06289.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11399601..11400270 | 1..670 | 99 | -> | Plus |
| arm_2R | 11401251..11401669 | 671..1081 | 97 | | Plus |
