UFO06290.5prime Sequence
1142 bp (1035 high quality bases) assembled on 2009-08-20
> UFO06290.5prime
CAGTCGACATGCAGTCAACCCAAAGTAAGAGTGATCGATCTTCGATGCAC
AGGGGCCCTCTACTTCTCTGCGCCGTGATGGTCGTCCTGGTGACTTTGCC
TGAACAGATAAATGCTCGTATGGCATTTGAAAAGCTAACGGACTTTGATT
TTCCGGGCAACACGTATTACAGCGTGAAAAACCTTTCACTGTATGAGTGT
CAAGGATGGTGTCGCGAGGAGGCAGATTGCCAAGCGGCGGCCTTTAGTTT
TGTGGTTAACCCTCTGTCGCCTTCGCAAGAGACCCACTGTCAATTGCAGA
ACGACTCCTCCGCAGCCAATCCTTCGGCAGCTCCGCAAAGAAGCGCAAAC
ATGTACTACATGATAAAATTGCAGCTGCGCAGCGAGAATGTGTGCCACCG
ACCGTGGAGTTTCGAGAGGGTTCCAAACAAGGTGATCCGCGGCCTGGACA
ATGCACTAATATACACCAGTACAAAAGAGGCCTGCTTATCAGCTTGCCTC
AACGAAAGACGATTCGTATGCCGATCTGTGGAGTATGATTATAACAACAT
GAAGTGTGTGCTCAGTGATTCGGATAGACGCAGCTCTGGACAGTTTGTTC
AACTAGTGGATGCTCAGGGTACGGATTACTTTGAGAATTTGTGTTTAAAG
CCGGCTCAGGCCTGTAAGAATAACCGTTCGTTTGGCAATTCCCAAAAAAT
GGGGGTCTCCGAAGAGAAGGTTGCCCAATACGTTGGTCTGCACTACTATA
CTGACAAGGAACTCCAAGTGACCTCAGAATCCGCCTGCCGTTTGGCATGT
GAAATTGAATCTGAGTTCCTGTGCCGCTCCTTCCTGTACCTGGGTCAACC
CCAAGGATCCCAGTACAACTGTAGCTATATCATTTGGATCATAAGACCCT
GCCCGATGGTCCATCCACTATTTGAACCATGAGCGCCCACTGATCGATCA
TGAGAGCTCATTGTCAGTACTTTGAAACCAGTGCGAGAAGCCGCGTTGGG
AGCTGGATCACGACGGAACTCTGATAAAATCGATACTCTACCGTAGCTAA
ACCATGAAGATCCACTGACCACTACCGCATGACGTACTGGCCAGACGCAC
TGCTGAGTCGGTCCTGCAGACCTGAATTGCGTAGTCGACACA
UFO06290.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tyn-RF | 3612 | CG17131-RF | 765..1810 | 9..1042 | 4920 | 98.7 | Plus |
| tyn-RE | 3541 | CG17131-RE | 694..1739 | 9..1042 | 4920 | 98.7 | Plus |
| tyn-RD | 3521 | CG17131-RD | 674..1719 | 9..1042 | 4920 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 196281..197326 | 9..1042 | 4710 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:58 has no hits.
UFO06290.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:00 Download gff for
UFO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP71-RA | 373..1445 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:12 Download gff for
UFO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tyn-RB | 430..1502 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:57 Download gff for
UFO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tyn-RD | 665..1737 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:57 Download gff for
UFO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 196272..197333 | 1..1052 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:12 Download gff for
UFO06290.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 93276..94337 | 1..1052 | 97 | <- | Plus |
