UFO06292.5prime Sequence
1099 bp (984 high quality bases) assembled on 2009-08-20
> UFO06292.5prime
CAGTCGACATGCCAGTCTCGGCGAAACGCTTACTTCGGAATTTTCAGTTC
ACCAGCTGCGATCGGAATGGCAAAATGTTGATTCACCTGCTGCTCATCGT
TTCGCTTCTGGAAGCAATTGGCGCCTTTCAGCCGGAGTTCGTGGAGAGCA
TTTCCAACGTGTCCGTGGCCGTCGGACGCGATGCAACCTTCACGTGTCAC
GTCCGACACTTGGGCGGCTATCGGGTGGGCTGGCTCAAGGCCGACACCAA
GGCCATTCAAGCCATCCACGAGAACGTAATCACGCACAATCCTCGCGTCA
CGGTCAGTCACTTGGACCAGAACACGTGGAATTTGCATATAAAGGCGGTT
TCCGAGGAGGATCGCGGCGGTTATATGTGCCAACTGAACACGGATCCGAT
GAAGAGTCAGATTGGCTTCCTGGACGTCGTGATTCCGCCGGACTTCATCA
GCGAGGACACCTCATCCGATGTGATTGTGCCGGAGGGCAGTTCCGTGCGA
TTGACATGTCGGGCTCGCGGTTATCCGGAACCGATTGTCACCTGGCGCCG
CGAAGATGGCAACGAAATTGTCCTGAAGGACAATGTGGGCACTAAGACCC
TAGCGCCCTCTTTTCGCGGCGAGGTGCTAAAGCTATCAAAGATCTCGAGG
AACGAGATGGGCTCCTATCTGTGCATCGCCTCCAACGGAGTACCGCCATC
GGTCTCAAAGCGCATCTCCCTCAGCATACACTTTCATCCGGTCATCCAAG
TGCCGAATCAATTAGTCGGCGCACCACTTGGCACTGATGTCCAAATCGAG
TGTCACGTCGAAGCCTCGCCCAAATCAATTAACTACTGGATTAAGGACAC
GGGTGAGATGATTGTGACATCGGGCAAGTATCATGTGCAGGAGAGCTCGC
AGTCCATGTACTAGACCAAATGTCGATGATAGTCAGGAAGTTTCAAAAAG
GATGATGTCGGATCCTATCGCTGCATTGCCAAAAACTCCCTCGGCGAAAT
CAACAGCAGTATCCGTTTATACGAATTCCCGGAACGAATCGTAATAAAAA
TCCGCTGAACGGCGGCGGAAAAGATGACCGACGAGCTGGATGCGGATGC
UFO06292.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32791-RC | 7668 | CG32791-RC | 246..1311 | 9..1073 | 5155 | 99.1 | Plus |
| CG32791-RA | 3576 | CG32791-RA | 246..1311 | 9..1073 | 5155 | 99.1 | Plus |
| CG32791-RB | 4540 | CG32791-RB | 1314..2275 | 113..1073 | 4635 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3523634..3523820 | 410..224 | 935 | 100 | Minus |
| X | 23542271 | X | 3514002..3514173 | 1023..852 | 690 | 96 | Minus |
| X | 23542271 | X | 3519825..3519955 | 732..602 | 655 | 100 | Minus |
| X | 23542271 | X | 3514866..3514987 | 854..733 | 610 | 100 | Minus |
| X | 23542271 | X | 3523920..3524033 | 226..113 | 570 | 100 | Minus |
| X | 23542271 | X | 3530315..3530420 | 114..9 | 530 | 100 | Minus |
| X | 23542271 | X | 3522211..3522314 | 512..409 | 520 | 100 | Minus |
| X | 23542271 | X | 3520042..3520134 | 603..511 | 465 | 100 | Minus |
| X | 23542271 | X | 3513602..3513651 | 1073..1024 | 220 | 96 | Minus |
| 3L | 28110227 | 3L | 5433780..5433839 | 657..716 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:52 has no hits.
UFO06292.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:59 Download gff for
UFO06292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 243..1342 | 9..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:11 Download gff for
UFO06292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 246..1345 | 9..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:08 Download gff for
UFO06292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32791-RA | 246..1345 | 9..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:08 Download gff for
UFO06292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3523634..3523819 | 225..410 | 100 | <- | Minus |
| X | 3523922..3524031 | 115..224 | 100 | <- | Minus |
| X | 3530315..3530420 | 9..114 | 100 | | Minus |
| X | 3519825..3519953 | 604..732 | 100 | <- | Minus |
| X | 3520042..3520133 | 512..603 | 100 | <- | Minus |
| X | 3522212..3522312 | 411..511 | 100 | <- | Minus |
| X | 3514002..3514172 | 853..1023 | 95 | <- | Minus |
| X | 3514868..3514987 | 733..852 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:11 Download gff for
UFO06292.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3408035..3408205 | 853..1023 | 95 | <- | Minus |
| arm_X | 3408901..3409020 | 733..852 | 100 | <- | Minus |
| arm_X | 3413858..3413986 | 604..732 | 100 | <- | Minus |
| arm_X | 3414075..3414166 | 512..603 | 100 | <- | Minus |
| arm_X | 3416245..3416345 | 411..511 | 100 | <- | Minus |
| arm_X | 3417667..3417852 | 225..410 | 100 | <- | Minus |
| arm_X | 3417955..3418064 | 115..224 | 100 | <- | Minus |
| arm_X | 3424348..3424453 | 9..114 | 100 | | Minus |
