UFO06293.5prime Sequence
1125 bp (996 high quality bases) assembled on 2009-08-20
> UFO06293.5prime
CAGTCGACATGCGGATCGAACCTGGGGACTCCTTTTGGACGAAAAAGGCG
ATGTTTTCCAACGCAGAAAGGCAGTACTTTGAGACGGTCCGTCCGCGGAA
GACCAGTCTTCCGGGCTCCACCGCGCCCAACATAGCCGCTCCGGTAACAA
AGGCCACGAAGAAGAATAAGACGATGGCCGAGATGATGCCAAACAAACTG
CTTTACATGAATCCGCTTACCATGGAGGCACACTTCTTTCTGCAGACCCT
AAACTCAGTGAACCAGACGACGAATCCGCCGCAGCTAGACCCGCACCTGG
CCAACCTGCTGGAGCGCATTATGGTGGGCATCGAGAGCTACTTGGACAGG
AATCCCACATACGTTTTGCCGCAGGAGATGGCCGCACCGGGTGAGGGCGT
GGCCTTCGTCCAGCCCCAGGAGCTGCAGACAATAAAGCGAACATTCAGCT
GTAGTTCCTGCAGCAACCGCATAGTGGGCACCACCATCGCAAAAGCTGTG
GCCCACCTTTCGGAGCAGCATCCAAAACCCAATCCCAACAATCAGCCAGT
CCAGCCGCATCCGACGCATCAGACGAAACAGGAGAAAAAGCAGGCCCAGG
TGAAGGCTCGTCAGCATATAACAGTACGGCTACCCAAGAAGGCCAGGGCA
ATGATTGTGGGAGAGATTACGAATGTGTTTAAGGACAAATACCCAATAGC
GGACAAGTTAAAGGTGATTCCCGAGTACGACGTTATCGAACAGGACCTGT
GCAAGCTTTTGTCGCCGGGCTTTCCCAAACAACCACTGCGAGTCTACAAG
TTCGGGTCCCGCATCACAGGCATTGGAAATCGATCCTCGGACCTGGACCT
CTTCGTCGACATCGGCAACACATTTCACACGTTCGAGCATCGAGCTTCCA
ACGCTACCGTCGCCAGCTGCGGGCTATGAGGAGTTCTTCTGCGACAGCGA
GGACTGGCGTCTTATTAATTTCATCGACAGCTCGCTGCCCATCATCAGAC
GTGCCACTACACCGGTATCGAGTGGCGACATTGTCTGAACAGCATGGCTT
TGCATTCAATCGCTCAATACTATTTGAGTCCACGCCCCTGATCAATATTT
GTGCCATTATGGTAAAGACCTGCCT
UFO06293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1091-RB | 1943 | CG1091-RB | 103..1233 | 8..1122 | 5025 | 97.5 | Plus |
| CG1091-RC | 1952 | CG1091-RC | 103..1242 | 8..1122 | 4925 | 96.8 | Plus |
| CG1091-RA | 1792 | CG1091-RA | 52..1082 | 108..1122 | 4525 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7084925..7085357 | 639..207 | 2165 | 100 | Minus |
| 3R | 32079331 | 3R | 7084542..7084767 | 865..640 | 1130 | 100 | Minus |
| 3R | 32079331 | 3R | 7085410..7085512 | 210..108 | 500 | 99 | Minus |
| 3R | 32079331 | 3R | 7085882..7085981 | 107..8 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 7084375..7084482 | 969..864 | 440 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:54 has no hits.
UFO06293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:58 Download gff for
UFO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 103..1172 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:38 Download gff for
UFO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 97..1166 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:54 Download gff for
UFO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1091-RB | 97..1166 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:54 Download gff for
UFO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7084375..7084481 | 865..969 | 98 | <- | Minus |
| 3R | 7084543..7084767 | 640..864 | 100 | <- | Minus |
| 3R | 7084925..7085357 | 207..639 | 100 | <- | Minus |
| 3R | 7085414..7085512 | 108..206 | 100 | <- | Minus |
| 3R | 7085882..7085987 | 1..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:38 Download gff for
UFO06293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2910097..2910203 | 865..969 | 98 | <- | Minus |
| arm_3R | 2910265..2910489 | 640..864 | 100 | <- | Minus |
| arm_3R | 2910647..2911079 | 207..639 | 100 | <- | Minus |
| arm_3R | 2911136..2911234 | 108..206 | 100 | <- | Minus |
| arm_3R | 2911604..2911709 | 1..107 | 97 | | Minus |
