UFO06301.5prime Sequence
1102 bp (997 high quality bases) assembled on 2009-08-18
> UFO06301.5prime
CAGTCGACATGTTCCAAGTCCTGCCCCGTCCGTCAAGATCCACGTTCCAC
TGCATAGCGGCAGCCGTTGTCACAGTCGTCCTAATGTCATGGGCCCGACC
GCTGGGCGTGCTATTCCTGGGACTACTTGGCTACTGGATCTACTGGACGC
GCTGCAGCTTCCGCGTTGTGCCTACGGACGAGCTGCGCGGCAAGATCAAC
ACCTGGCTGCAGAGGATCGACGACTGGCGCCACCGCAGTCCCAGCATGTT
CTGCTTGGCCAGCAGCGGTTGCTTGGGCACCCTCGCAGTGCTCGGTCACC
TTATATCCGGATCAACGCTGGTACTGACCATCCTGGTCGTCTCCGCACTA
GTCTCCACCAAGTACACCTTCAAGCTGCTGAAGATCGAGCACAGGGACTT
TCAGTGGTCGGAGAAGCTGAACTACAACAACTTGGAAGCCGAGGCAGAGG
ATGAGTTCCTGCCGGACGTGAACGAGTCGAATCTGTTTGTGTTGGAGCGG
GCCAGCGATGTGGCCACCATAAGTTCGCCCACCGATGCGAATGATGAGGA
CGATGACGATCGCAGCGACGACGTACCGTCGGAGCTCCTCATTCCGGATG
CGATACCCGAGATTGACGAGCAATCCACCGACGAGGACGATGAACTAGCC
CCGCTGGCGCCCAAGAGGCAGGAGAAGCTGCAGCCACAGGAGCAGCCGGC
CAAGGAGAGCGAGGATATGAACTTCCGAAAGAGTCACTTCAAGCGTGACT
CGTCGCTGTCCACATCCTCCTCGTCGGAGGAAAGCCTGTCAAAGGGGCTG
CAGTTCCCCGATCACACCACCGTAGATGCCACTGGCAACCCTCAGTTGCG
TCAGATAACCGCTGGCCCGGATCCCGCCGGCGAGCTTGTAGCCCTGGCCG
TGAAAACGCAGCTCAGCGCTCCTGGCAAACAGCGGGAAGCTCCTGCCCAG
CTTGTACCGCTGTGCAATGGGGAGCAGGTGGTGCTGCTGCACCGGTGCAC
GATGCACGATTCAAATCGAGATCTGACAGCACGCATTGTCACCGCCCTGA
TCGATCGGACAGAAGCGATTTGGAACTCGATCGGAGTGACTAAGGCAAGC
CT
UFO06301.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12576-RE | 2404 | CG12576-RE | 415..1470 | 9..1049 | 4915 | 98.6 | Plus |
| CG12576-RF | 2547 | CG12576-RF | 558..1613 | 9..1049 | 4915 | 98.6 | Plus |
| CG12576-RA | 2407 | CG12576-RA | 418..1473 | 9..1049 | 4915 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22475851..22476453 | 991..396 | 2710 | 98.2 | Minus |
| X | 23542271 | X | 22477179..22477484 | 396..91 | 1530 | 100 | Minus |
| X | 23542271 | X | 22480511..22480594 | 92..9 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:27 has no hits.
UFO06301.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:31 Download gff for
UFO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 470..1556 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:57 Download gff for
UFO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 410..1496 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:56 Download gff for
UFO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12576-RA | 410..1496 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:56 Download gff for
UFO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22475762..22476452 | 397..1071 | 97 | <- | Minus |
| X | 22477179..22477483 | 92..396 | 100 | <- | Minus |
| X | 22480512..22480602 | 1..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:57 Download gff for
UFO06301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21877598..21878288 | 397..1071 | 97 | <- | Minus |
| arm_X | 21879015..21879319 | 92..396 | 100 | <- | Minus |
| arm_X | 21882348..21882438 | 1..91 | 95 | | Minus |
