UFO06303.5prime Sequence
1101 bp (974 high quality bases) assembled on 2009-08-18
> UFO06303.5prime
CAGTCGACATGGAACGGCCACACATTGGCTTGTTTACCTATAAAATCTGT
AATGCATTGAAAGAACTAACGGAAAGGATGATTCGCTTACGGCAAGCAAT
TTGTGAGCAGCTGCCGCATCTCAAGAATGCCTGCTATGCCCTGGAGGTGC
CTGTCAAGAAACAACAGCTACAGAATAGCCGACGTCCAACTGTGGAGTGG
ATTCTGCCCTCTGCGTTTGCGCAACAGGAGGTGGAACTACTGGACTCATT
GAAGAAGCGCAGATTCGAGGCCTATGTGGAAAACGTTCGGATTGTACCTA
GCGCTGGGCGCAGTGCAGCCAAAATCGAGTTTCAGCTGCAGCCACAGGTC
TTTGTAGAACAGCTCCTCCAAACTAAAGAGATTGCTTTACATCCTTCGCC
CTTTGCTGCGGAACACATAGTGGTTGAGTACAGCTCGCCCAACATAGCCA
AACCCTTCCACGTGGGCCACCTGCGCTCCACAATCATCGGCAATGTTCTG
GCCAACCTGCATGAGCATTTGGGCTACCGCACAACACGGTTGAACTATCT
GGGGGATTGGGGCACGCAATTTGGACTACTGGTATTGGGAGTTCAACTGC
TGAATGTAAGCGACAAAGAGATGCAACTATCCCCAATAGAAACGCTGTAC
AAATCCTACGTGGCCGCCAACAAGGCTGCTGAACAAAGACCTGAAATCGC
GCAACAGGCGAGGGACCTCTTCGCCGCCTTGGAAGGAGGAACGGATAAAT
CAATGGCCAAGAAATGGCAGCAATACAGAAACTACACTATAGAGGATCTA
TCCAAAGTCTATAACAGATTGGGCGTTCACTTCGATAGCTACGAATGGGA
ATCCCAGTACTCCCAGCAGCAAATTAAGATGTTCTGGACAAACTGCGAAG
CGCTGGACTCCTCCAGCCGGAGCACGATGGTCGTGAGATTGTCCTGGTGG
ACGGCCGACGCATTCCTGTGATCAAGAGAAATGGATCCACTTTGTACTGG
CAGGGACATACCTGCCTGCTGAAGACTCTCAGGTTCAGTTCTCAGCTGTC
TTAGTCTGGACATGGTCAACGGATATTTTTATGCTTTATACGACTGATAC
G
UFO06303.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10092-RB | 2748 | CG10092-RB | 62..1153 | 8..1084 | 4980 | 98 | Plus |
| CG10092-RA | 1934 | CG10092-RA | 62..1153 | 8..1084 | 4980 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7887337..7888227 | 108..997 | 4360 | 99.6 | Plus |
| 3R | 32079331 | 3R | 7887208..7887277 | 41..110 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:34:47 has no hits.
UFO06303.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:30 Download gff for
UFO06303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10092-RA | 18..1058 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:04 Download gff for
UFO06303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10092-RA | 57..1097 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:51 Download gff for
UFO06303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10092-RA | 57..1097 | 1..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:51 Download gff for
UFO06303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7887208..7887277 | 41..110 | 100 | -> | Plus |
| 3R | 7887340..7888227 | 111..997 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:04 Download gff for
UFO06303.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3712930..3712999 | 41..110 | 100 | -> | Plus |
| arm_3R | 3713062..3713949 | 111..997 | 99 | == | Plus |
