UFO06306.5prime Sequence
1153 bp (1010 high quality bases) assembled on 2009-08-18
> UFO06306.5prime
CAGTCGACATGCAGCGCCAGAAACCCAAGGGACCCGGCAAACCGGGTTCG
CGCTTCAAGCCGGGATCCGGCACGTTCAAAGGAGCTGGTGGTGGCCGGAA
AAGCGGCGACAACAGCCAGAAGCGTCCGCGCCAGGAGATCAACAAGTCGC
GACTGGCCGCCACCGAAGCGGAGATCCAGGACCTCAAGACCAAATACGCA
GAGATCGATGCTACTGCCATTAAGAAGTTCGCCCAGTTTCCGCTGTCCAA
GAAGACCCAAAAGGCACTGGCGGAGTCCAAATTCGTGCATCCCACGCAGG
TGCAGCGGGACAGCATTGGACCCGCACTGCAGGGCAAGGATGTGCTGGGC
GCGGCCATCACAGGCAGTGGCAAGACACTGGCCTTTCTCATACCCGTTCT
GGAGCATCTGTTCATGAACAAATGGTCGCGCACCGATGGCGTTGGCGCTA
TCATCATCTCGCCCACCCGCGAGCTAGCCTACCAGATCTTCGAGACCCTA
AAGAAGGTGGGAAAGCACCACGACTTCTCCGCCGGCCTCATCATCGGAGG
CAAGAACCTGAAGTTCGAGCGCACTCGCATGGACCAGTGCAACATACTGA
TCTGCACACCCGGAAGGCTGCTGCAGCACATGGACGAGAATCCTCTCTTT
AATACGAGCACCATGGAGATGTTGGTCCTGGATGAAGCCGATCGCTGTTT
GGATATGGGTTTCCAGAAGACCCTGAATTCAATCATAGAAAATTTCCCAC
CAGTGCGTCAAACGCTGCTATTCTCGGCCACGCAAACGAATACGGTGCAG
GATTTGGCGAGGCTTAATCTAAAGGATCCGGTCTACGTAGGCTACGGAGG
AGCGACGCCAAGAGAAGAGCCCAGCGCCAGCACGAAGAAGACTCCGAACA
CAGCTGTCTTGGCAGTTCCTGAGCTTTGCAGCAGAGTTATGGGGGTGTTG
AACCTGGAGGACAGATCACCATGCTGTGGTCGTCATCAGATCATTTGAAG
CAGAGATCATTGGTGTTCGTGGCAGTGCAGCAGGCAGTACCTGTACGAAG
ATATTTTTGTAACTGGCGCGGTAGCCGCTGCTGCTCTTTATGACGCTCCA
TCAGATCGTCGCATGCCACCTACAAGATCTCGCAAGGCCGTCGTATGTTC
CAT
UFO06306.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5800-RA | 2647 | CG5800-RA | 88..1218 | 9..1123 | 5000 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17636831..17637419 | 396..983 | 2785 | 99.3 | Plus |
| X | 23542271 | X | 17636368..17636756 | 9..397 | 1930 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 22:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1038..1161 | 69..186 | 136 | 62.4 | Plus |
UFO06306.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:27 Download gff for
UFO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 78..1219 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:17 Download gff for
UFO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 80..1221 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:57 Download gff for
UFO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5800-RA | 80..1221 | 1..1126 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:57 Download gff for
UFO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17636360..17636754 | 1..395 | 98 | -> | Plus |
| X | 17636831..17637577 | 396..1126 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:17 Download gff for
UFO06306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17530393..17530787 | 1..395 | 98 | -> | Plus |
| arm_X | 17530864..17531610 | 396..1126 | 95 | | Plus |
