UFO06307.5prime Sequence
1008 bp (953 high quality bases) assembled on 2009-08-18
> UFO06307.5prime
CAGTCGACATGTGGCCACCCAGCTCCTGTCTGTGGTTGGCTCTCGCCCTC
CTGGTGGGCGTGGCCCAGGCCCAGAGCGGCAGTCGAGAGCACTTCGAGGA
TGCGGACAAGTCCAGCGAGTATACGGATCAGCAGTTCGATCTACGGCACA
CGATTCCCGGAGAACCGGGCCTAGACTATCCCATTCTAAGTTCGCCGCCA
AGGACCAGCTTTGTGTGCAAGGGAAGACATGAAGGTTATTACGCGGATGT
AGAAAGTCGCTGCCAGGCCTTCCGCATTTGTGCCCATACCGCCCGATCAC
CCCAAGGATTCGGTTTCCTCTGCCCCAACGGAACGCTCTTCAGCCAGAAG
AACTTTGTGTGCGATTGGTACCGCAATGTGAACTGCGATGATTCTGAAAA
GTATTATGAAATGAACGAGGAGAAAACCGTTGGCAGCACCCACGAAATGA
TGGAGCGAGTGCGTCACATGATGGAATACCCCATGAAAACAATTTCAAAG
GCCTTGCAACAAACCCAATCCCAGTCACAGAATCCACACCATAGTCTTAG
CAAGGATCTAAGCGGAGCTAGTGGTGTTTTGAGTCAACCTGCGGCCATTA
AGCTCAATGATCCTGAAACCCAAGTTGTTGGACGCGGAGAAGACGTGAAA
AGTGAGCCATTGAGTGCAGTACAACTAGGAAGCATTAACCCCGGGGACAG
CGAAGATGAGGGGTATTTATGTGAATAGTTTGGGAGAACTTTCTTCAGAT
CCAGGCATTCAGTTTGATCACACCAATGCCCATATCGTGGCAGATATCCC
AGGGAGTACCACTACCAGAAGCAGAAGACTTTGCCGAGCGTGTTAACGCG
GGCTTGGATATCCTAACTGACTCGGATTCAACTTCGGTGAGGCTATGGCA
CCGATTACTCAAGCATAAAGAAATACTAATGACAGTACACGCAAATGGAC
TGCTCTGATATCGATTGACTAGGCCGCTATGCTGTTTTGTCTGCAGTACA
CGGTGTAG
UFO06307.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5756-RC | 4100 | CG5756-RC | 247..1177 | 8..933 | 4425 | 98.8 | Plus |
| CG5756-RB | 2666 | CG5756-RB | 247..1177 | 8..933 | 4425 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18104235..18104940 | 933..233 | 3125 | 98.4 | Minus |
| 2R | 25286936 | 2R | 18105082..18105310 | 236..8 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:05 has no hits.
UFO06307.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:04 Download gff for
UFO06307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 244..1181 | 8..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:49 Download gff for
UFO06307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 247..1184 | 8..941 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:21 Download gff for
UFO06307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5756-RB | 247..1184 | 8..941 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:21 Download gff for
UFO06307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18104269..18104938 | 235..902 | 98 | <- | Minus |
| 2R | 18105084..18105313 | 1..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:49 Download gff for
UFO06307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13991774..13992443 | 235..902 | 98 | <- | Minus |
| arm_2R | 13992589..13992818 | 1..234 | 98 | | Minus |
