UFO06308.5prime Sequence
1005 bp (565 high quality bases) assembled on 2009-08-18
> UFO06308.5prime
CAATCCACATGTCCAACGGTCGTTACGGGAGGTTCGGAGCACTCATCGGC
GTCGCCTGCGTGAGCAGCACCCACTGCCGCTTTCTGATATACTCAACGAA
AAATGCCGAGGTCCTGGCCTACCATGAGCTGAACCTGCGACAGATTGTCC
ACCAGGCGGGCTGGATGGAGTACGATCCGTCGGAGATATGGAAGAACACA
CAGGAGTGCATAGAGACCGCCTATAAGAACCTGGTTATACTAAAGATCAA
TCCACGTGATATTATTGCCATCGATATCGTAAATCAGCGGGGCACCTCGG
TGTTATGGAATTTGGAGACGGGACAGCCACTGCACAATGCCATCGGATGG
TCAGATTGCCGTAACACTCCCATCCTAAAGACCCTGCTCCATAATGTCCG
GCACAATGTGGACTACGTGAGGTATCGCAGTGGCTTGCCCCTGAGCACCT
GTTTCAGTGCCCTAAAGATCCGTTGGCTAATGGATCACGTTCCTGCCGTA
CCCACTGCCATTGAGGAAAACAAGTGCTTATTCGGCACCTTGGACTCCTG
GCTTCTGTGGAACCTAACCGGCGGCGTTGAGATGGGTGTGCACTCTACTG
ACATTACCAATGCCCACTACACTTCCCTTATGAACGTGTCCACAGAGCAG
TGGGATCCTAAACTCTGCCAGTTCTTTCGATTGCCCCTGAACATACTGCC
ACGCATACGATCCAACTCCGAAATCTTCGGCTATGTGCTGGAGGGTCCTT
TGCATGGCACTCCCATAGCGGCCATGATGGGTGAGCATCCCGCAAGTTTG
TTGGGCCAACTCTGCGTGAACGCCAGGCAAAATGTCTGTACCCTGCACGA
CAGCTGTTTCGTGCTCCTTATCCGGGCAGGAGATCTGGACTCTGCAAACG
GACTGATAACTGCATATCGACATCTGGTCGAAAAGCGCCACTAGTACTCA
CTCAAGGAGCATTCAATGCTGTTCGCAGCTACATGGCTGCGGGATAGCTA
CGATC
UFO06308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8298-RC | 2978 | CG8298-RC | 120..1128 | 9..1001 | 4270 | 95.9 | Plus |
| CG8298-RA | 2069 | CG8298-RA | 120..1128 | 9..1001 | 4270 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11989565..11990264 | 214..910 | 3175 | 97.6 | Plus |
| 2R | 25286936 | 2R | 11989381..11989510 | 86..215 | 635 | 99.2 | Plus |
| 2R | 25286936 | 2R | 11989250..11989327 | 9..86 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:41:02 has no hits.
UFO06308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:03 Download gff for
UFO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8298-RA | 113..1022 | 1..910 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:44 Download gff for
UFO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8298-RA | 115..1024 | 1..910 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:41 Download gff for
UFO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8298-RA | 115..1024 | 1..910 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:41 Download gff for
UFO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11989245..11989327 | 1..86 | 94 | -> | Plus |
| 2R | 11989382..11989510 | 87..215 | 99 | -> | Plus |
| 2R | 11989567..11990264 | 216..910 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:44 Download gff for
UFO06308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7876750..7876832 | 1..86 | 94 | -> | Plus |
| arm_2R | 7876887..7877015 | 87..215 | 99 | -> | Plus |
| arm_2R | 7877072..7877769 | 216..910 | 97 | == | Plus |
