UFO06314.5prime Sequence
1116 bp (1025 high quality bases) assembled on 2009-08-18
> UFO06314.5prime
CAGTCGACATGCCCAACACATACAGTGCTTTGCCCCATAATCGGAGCTCA
GGTGAGAGCCAGCAACAGTGGACATCCTCCAGTAGAAATCGCACCTGCCA
TCCAGTGAGCATGGCCAGATCAACGAGTGGCCACTTGATTTTCCTCCTCT
TGATCTGCCTAATAAACTCGGCCGCCAAAGCGGATGGAACGGCTCGGAAT
GGTCGTCTTGGCCGTCATCTCTCTACCACTCCTTTAAGCCATCCGACCGT
GGAATCGCAGCCAACCGAGGAGCAAGAAATGTTTACCGAGTCACCAACGG
AATCCCCAGAGGATGTCGAGCTTGCGACGACGACGGAACTACCGCCGGAA
GAAGACTGGCAGCCTCTGATAAATGCCACCAAGTTTCCCACGAGGAAGCC
GATGGACAAAATGGCTCCCAGTGATTCCCTGCTCCTTAGACTGGCCCGGC
GATTCGCCAGTGGAAACGAGCTGTGGGACGGCCTTGTCCGCGATTGCTAT
CTAAAGCCAGATGTATCTTGCTTCCAAAAGAACGTCTTCAGCTACCTGGA
TAACGTTCTGGATGTGCAGGACGTGAATGTGACCCAAAGGCTCAAGTTCT
TCAAGAATCAAGTGGACTACCAAGTGGACAAGGAGAAGGAGGAGCACTCG
GAGGCACGTGCCGCCAGTGCGGAAACCCCGATCGAGGAAGTGACCAGCGC
TCTATATGGCAAGAGCATCAAGTTTGCCATGACCCACGATCTAGAGGTGG
ACCTGCCTGAGGTTATGTTCAATGGCGCCACCTTTCGCATCTCGCCGCGA
GCCATTGAAGGCAATGGAATCATCGCCAAGCTGGAGCTGATTCCCAAACA
GGTAGTCAAAGCCCGACTGGGCGGGGGCGATAATCCAGAAAAGAATACAA
AAATTTCTACGCAGCAAACTGGGGGCTGTCATTCCTCGCATTGCTGCTGA
TCATTAAAATCATCAAGATCAAGATGTTCTGGCTCCTGCCAATCGTCATC
GGAGTGGTGGCGGCAAAAGCTGCTGCTAAAGTTCTGCTCTTCTGTTCCAG
GCTGTCGCATCTCTCAAGCTCTGCCGCCTACAGCAATCTATCGCACCGCA
GTACCACACCACACTA
UFO06314.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi17-RD | 4068 | CG15598-RD | 1305..2392 | 9..1088 | 5015 | 98.3 | Plus |
| Osi17-RC | 3355 | CG15598-RC | 592..1679 | 9..1088 | 5015 | 98.3 | Plus |
| Osi17-RB | 3762 | CG15598-RB | 1305..2392 | 9..1088 | 5015 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6315887..6316541 | 9..663 | 3275 | 100 | Plus |
| 3R | 32079331 | 3R | 6317773..6317999 | 663..890 | 1075 | 99.1 | Plus |
| 3R | 32079331 | 3R | 6318164..6318300 | 899..1034 | 485 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:12 has no hits.
UFO06314.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:01 Download gff for
UFO06314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RA | 583..1689 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:25 Download gff for
UFO06314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RB | 1298..2404 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:54 Download gff for
UFO06314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi17-RB | 1298..2404 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:54 Download gff for
UFO06314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6317774..6318007 | 664..898 | 98 | -> | Plus |
| 3R | 6318164..6318374 | 899..1097 | 91 | | Plus |
| 3R | 6315880..6316541 | 1..663 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:25 Download gff for
UFO06314.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2141602..2142263 | 1..663 | 99 | -> | Plus |
| arm_3R | 2143496..2143729 | 664..898 | 98 | -> | Plus |
| arm_3R | 2143886..2144096 | 899..1097 | 91 | | Plus |
