UFO06315.5prime Sequence
1117 bp (998 high quality bases) assembled on 2009-08-18
> UFO06315.5prime
CAGTCGACATGCATGGAATAACACACCTGTACCGCCAGCATGCCGTGGAA
AAACAGCTGAGCGGTGGCGAGAGCTGGTCCCGCCAAATTTACCCGAGCTA
CGGCAGCAGTGCCGATGCCTCCTCGCAGGGCAGTCGCCTCTACAGCGTGG
ACTCCTCCAGCAGCTCCAGCTCCAATTCCAATAATTCCGGAGGTGGAGGC
AGTGGAACTGCAGGGGTTGAGAATTTGGGAGGAGTCACCGGCAGCGCCTA
CGCCCAGTGGCAGAGCGACCGACACTCTCTGCCACAGGCTGTGCCCGATG
CCCCTCGGTCGCTGGCTAACCACCACTACCGCAACTCGCCCACCCACCAA
GCCCACTACCAGCAGCCCACTAGCGGCAGTCTCAAGCGGACACCCTCCTC
GAAGCGCAGCTTCCTGGAACGATCTCACAGTCCGGCTATATATGGTAGCA
TGCGTCGCAGTGCAGGTCCGGACTTCGGCTCTCCCCCGCCCACCGCACCC
GTCGGTGGAGGCGGCTACTTCCCACACGATCTCGACGACATCTACGAGAG
CCAGACGGACCATCAGTATTTCACCCACACGGGTGCTAGCGGACCACAGC
AGCAGCGACCCACGGCTATCTCGATCTTTCATCGAGTGAGTGCTGCCCAC
ACCTCGCTGGACGACTATACCTTGCCCGGTGATGCATCGCGCCAGTCCAT
GAATAGTACAGACAGCGGGGTGAGCAGCGGTCCCTTCAATCGCCAGCGTT
TCGACAACTCGTCATTCGCCAAGAGTCTCAGCATCGACGAACAGGACCCA
CAGCACTCGCCCCATAAGGAAGTCACAGCAAGCACGGAAAGCACCATCAC
CATCATAGCCATCACCACCATTCGATCCACGAGCTAGTGAAGCATTTTGG
CAAAAGATGCACCTGTGGCCGAGAGCACCACGACGCCCAGAGCGTTGCAC
CTCGCCACAGACGATCCGCAGAGAACTTCCGCACCAGATCCAAGAAGCTG
ATGTGAACACGCTCAGTCGCCCAACGCATTCTCGATGACTGCGGGCCCCT
ACAAGAATTACGATCGCATAGTCAGAGTGCTCCATGCTCTGCCTCCCCGG
ATTGGAACGTCTGGCAT
UFO06315.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RE | 3308 | CG17299-RE | 428..1541 | 9..1103 | 5030 | 97.8 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 317..1430 | 9..1103 | 5030 | 97.8 | Plus |
| SNF4Agamma-RJ | 3675 | CG17299-RJ | 795..1908 | 9..1103 | 5030 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21201685..21202324 | 447..1074 | 2585 | 96.9 | Plus |
| 3R | 32079331 | 3R | 21200971..21201408 | 9..446 | 2190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:01 has no hits.
UFO06315.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:00 Download gff for
UFO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RC | 310..1404 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:48 Download gff for
UFO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RJ | 790..1884 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:19 Download gff for
UFO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RJ | 790..1884 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:19 Download gff for
UFO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21200966..21201408 | 1..446 | 99 | -> | Plus |
| 3R | 21201685..21202327 | 447..1077 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:48 Download gff for
UFO06315.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17026688..17027130 | 1..446 | 99 | -> | Plus |
| arm_3R | 17027407..17028049 | 447..1077 | 97 | | Plus |
