UFO06316.5prime Sequence
1080 bp (895 high quality bases) assembled on 2009-08-18
> UFO06316.5prime
CAGTCGACATGGCTCTGACCAATTTCTCGCTGCCCTTCGGTGCCCTGGGC
CAGCCCTGGGGAGTCACCATAGCTCCCCTGCATCCAATCCACCAGTTGGC
CAGCAACACAAATAATCTGCTCTACTCGCCAGCTGACCACCAGCAGCAGA
CTCCCGCGGAGGCAGCCGCCGATCCGGAGTACTTCAAGAACAATCCCTAT
GCGCCGCCGCAATCGGGTGGTTATCAATATCAAAATACAGCTGGACGACG
CAAGCAGAGTAACGCCTATTTGCCACCGACAGCGCCGAATGCTGTCCGGA
ATTCCGTTTACCACATCCAGCAGGTACAGCAGACGCAGCAGCAGCAAACG
CAACAACAACACCAGCAGCAGGATCAGCATGAGAACAGCGTGTCCTTCCA
GAGCAGCAGTTCCAGATCAAGTTCGAGCAGCACCACGGGCCAAAGTTCCA
TCCAGCTGACACAGACTCATGCGAGTGGCCGGGGACCGGCGGAGGGTTCG
TACTCCCGTTATCCCGGACAGCAAGCACAGCCGCCGCAGCAGCAGCAACC
GCAACAGAAGCAATATTTCAATGCACACGGCAGTGCCAGTGCCACTTTTA
CTAAGAACAGCGGCAGCTTTAGTATTACCAGCTTTGGCAGCAGGCAGCAG
CAGCAGCAGCCACCGCAGCCGCAACAACCACCGCCATCGCAACAGCAGCA
ACCACCACCTGCACCACCGCCCCAAAGGTCCAGGCAGGCCAAGCCGGAGG
CTCAACCAGCTCAGACATACGGAGTTGCCCCGCCGGAGAATTATCCGGAA
CGAGCACCAGGATTTACACGGGTTCAGGCTGGTCAGGGATCCAGGACTCA
GTACACGCCGTTCTAGACTACGACGTGAGAGTGAGAGAAATAAGAAAAAA
AAAGAACGACAAAGGAAGAGGCCTTTCTACGAAGGCCAAGAAAAAAGATA
AATCCAATAACAATCAGATGCCCCCGTTGACGCCCATCCAGGGACCGAAT
TACTGAAAACGGGACGTTCAGTGGTGCCGCTCTTTCTCTATCGAACTCAC
ACCGATCGTCTACGATCGATTGGTGGACGG
UFO06316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz3-RA | 2552 | CG7104-RA | 406..1437 | 8..1034 | 4510 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7878277..7879147 | 877..8 | 4305 | 99.9 | Minus |
| 2L | 23513712 | 2L | 7876108..7876166 | 1004..946 | 205 | 89.8 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6531..6960 | 325..754 | 302 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2739 | 327..757 | 271 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2540 | 518..725 | 256 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2405..2856 | 310..756 | 238 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2608..3012 | 310..708 | 181 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6946 | 518..686 | 177 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2541 | 519..687 | 163 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6997 | 519..704 | 156 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2661 | 648..718 | 145 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1118..1175 | 519..575 | 125 | 70.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3369 | 522..609 | 121 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1537..1601 | 517..577 | 117 | 69.2 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 841..895 | 524..579 | 115 | 69.6 | Plus |
UFO06316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:59 Download gff for
UFO06316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spz3-RA | 398..1454 | 1..1052 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:38 Download gff for
UFO06316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz3-RA | 400..1456 | 1..1052 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:03 Download gff for
UFO06316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz3-RA | 400..1456 | 1..1052 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:03 Download gff for
UFO06316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7878207..7879151 | 1..947 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:38 Download gff for
UFO06316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7878207..7879151 | 1..947 | 96 | | Minus |
