UFO06318.5prime Sequence
1068 bp (970 high quality bases) assembled on 2009-08-18
> UFO06318.5prime
CAGTCGACATGGCATTGAGCAGCAGAGTTCTTTGTCTGCGATTGCAGCAC
CATTTATTACTGGTTATTTTAACGATTTTCCTGCTTTGCCCCGCCGCCTC
GGCCCAGAACGAAGAAGAAGATGGTCCGTACCGGGGAAAATATCTGGGGA
AACTGAACTCCTACCATCATCAAGTGTCCGGCGATGTGTACGCTGTGAAT
GAGTACACCTTTCTGATTGTGGGCTTTAACTACGATGGCAACGGGGCGGA
TACGTTTTTCTGGTCGGGCGCTAGTAATCGGCCGGGACCGCAGGGATTCA
TTGTGCCCGATGAGTATGGCAAAACCAACATTCTGGATCGCTATCACAAC
AAGGATTTCACGCTGACGCTGCCGGATCGAAAGAAGATAACTGAGATTAA
ATGGCTGGCGGTTTACGATCTGAGCAGTCAAAACAACTTTGGCGACGTTT
ATATACCCGAGGAGTTCGATCCACCGATGAGCCAATTGGGCGGAACCTTC
TCCAAGCGCAGTCACAATGTGAGCAGCAGCAGTGTTGAGATCTTGGACTC
AAAGACCATTCGCATCAAGGACTTTACCTACGATGGGCGTGGCAAGAGGA
CATTTTTCTGGACAGGAGTCGGGCCACAGCCATCGAGTCGAGGAAGCAAG
CTGCCAGATGAGCGAGGATACCTTGATCCTATAAGACAGTACAACAAGGA
GACCATAGAACTGGAACTGCCAGGAGATAAGACTATCTTTGACATCGATT
GGATCAGTGTATACGATGTGGCTGACAACGAGAACTATGGTCATGTTCTG
TTCAACGATAAACTTAATGTTCCACCTTCCCTAGTGAAAGTTACACCATT
CGAATTCTCGCTGCCCAATTGCCGGCAACTACACAGATATGCAGTGTCCT
GGGAGGTTTCGGGCCGCAATCACGTTCACTATCCGGTCAGGTGGGCGCAA
CGATATATGTCTTTCGCTATCCGATCTGATGTATCAGCAGATGATGCTCG
ATGTCTGTGCTATATAACGACATCGAGCTACCGTGACTAAATCTCGTAGG
CTGCGTTCAGGTGTCAAC
UFO06318.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knk-RA | 2674 | CG6217-RA | 446..1483 | 9..1024 | 4670 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10124120..10124467 | 670..323 | 1740 | 100 | Minus |
| 3R | 32079331 | 3R | 10123743..10124047 | 966..671 | 1130 | 96.7 | Minus |
| 3R | 32079331 | 3R | 10124542..10124764 | 322..100 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 10125129..10125219 | 99..9 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:34 has no hits.
UFO06318.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:57 Download gff for
UFO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 443..1456 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:44 Download gff for
UFO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..1459 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:14 Download gff for
UFO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knk-RA | 446..1459 | 9..1005 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:14 Download gff for
UFO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10123696..10124047 | 671..1005 | 95 | <- | Minus |
| 3R | 10124120..10124467 | 323..670 | 100 | <- | Minus |
| 3R | 10124542..10124764 | 100..322 | 100 | <- | Minus |
| 3R | 10125129..10125219 | 9..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:44 Download gff for
UFO06318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5949418..5949769 | 671..1005 | 95 | <- | Minus |
| arm_3R | 5949842..5950189 | 323..670 | 100 | <- | Minus |
| arm_3R | 5950264..5950486 | 100..322 | 100 | <- | Minus |
| arm_3R | 5950851..5950941 | 9..99 | 100 | | Minus |
