UFO06322.5prime Sequence
1110 bp (1000 high quality bases) assembled on 2009-08-18
> UFO06322.5prime
CAGTCGACATGAAACCCATGCTGATCCTTTTGGCTCTGGCAGGCTTTGCC
ATCTGTATTCGGGCAGACGTGTCCCACCTGTACGGAGGAGGTTACCACGA
TCACGGCCATGATCACCATCACCACCATGATCACGATCACGATCATGATC
ACCACCACTATGATGTCCATTCCCACCACCATTCTCCCTCGTCACACGAT
CATCATGATCTGCACATTGATCTGCACTATCAGCCGGATCACCACCATCA
TCATCATCAAGAGGCCAAGTTCGATATCCCTAGCGGATATAGCTATGGAC
CTCCAGAGAAACCTCGCCAGAAGTACCTGCCGCCCAAGGTTTCCCTGCCA
CCGCCACCACCTCCACCGCCCAAGGCAACTTATCTGCCTCCCTCAAAGCC
TGAAGTGAAGTACCTGCCCCCCGAGCCGGTGGCCAAGTATCTGCCACCCA
AGGTCGCTCCCAGCCTGCCTCCTCCACCACCACCTCCAGTTGTGGCGCCC
AAGCCCACATATCTGCCTCCCAGTCCGCCAGAGTCCAAGTACCTTCCTCC
TCCGACGCCCGAGGTGAAGTATCTGCCACCTGCTCCAGTGGCAAGGTATC
TGCCACCCAAGGTTGCACCCAGTCTGCCACCACCACCTCCACCCCCACCA
GTGGCTCCCAAGAAGCTGTATCTTCCTCCTGCCGAGCCGGAGACTAAGTA
CCTGCCACCTTCCGAGCCCGTCGAGAAGTATCTGCCTCCTAAGCCCGAAC
AAAAATATCTGCCACCCCAGCCTGAGGTAGATTTCCACATACCGATTCCA
TCCTATGCACTGCCCTTGGGCCCTGCACCAAGTCCAATCCACGACGCCGA
GCCTGGTTACCACTACAAGCCTCCCACTTCGCCGTTTCAGCATGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCTTAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATATCACACTAGCCTAAGAGGATCCTGGTCATGA
CTAGGGCTTGGATTCTCACCAAATAAAAAAACGCCCCGCGGGCACCGACG
TTCTGAACAATCCGATGGAGTTCTGAAGTCATACTGATCTTATTCAACCG
GAGTTCAAGC
UFO06322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15022-RA | 1063 | CG15022-RA | 71..951 | 9..890 | 4370 | 99.8 | Plus |
| CG15022-RA | 1063 | CG15022-RA | 460..643 | 557..740 | 230 | 76.3 | Plus |
| CG15022-RA | 1063 | CG15022-RA | 619..802 | 398..581 | 230 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4459305..4460183 | 890..11 | 4335 | 99.8 | Minus |
| 3L | 28110227 | 3L | 4459532..4459637 | 503..398 | 215 | 80.2 | Minus |
| 3L | 28110227 | 3L | 4459691..4459796 | 662..557 | 215 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:10 has no hits.
UFO06322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:02 Download gff for
UFO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15022-RA | 61..951 | 1..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:57 Download gff for
UFO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15022-RA | 65..955 | 1..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:57 Download gff for
UFO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15022-RA | 65..955 | 1..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:57 Download gff for
UFO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4459301..4460191 | 1..893 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:57 Download gff for
UFO06322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4459301..4460191 | 1..893 | 99 | | Minus |
