UFO06327.5prime Sequence
1135 bp (994 high quality bases) assembled on 2009-08-18
> UFO06327.5prime
CAGTCGACATGCATGGACATCACAACCACAACCATCTGCCGCAGCAGCAG
CCACAAAATCCGCAGGAGCAGCAGTCGGGTGCCATCATGAAGGCAGCCAA
CCAGCCCCACCATCCCGCCCACAGCCATCCGCTCAATCACCCACATCCGC
ACCAGCATGCCCAGCCACATCCGCATCCACATCCCCATCCGCATCACAAG
CTGTCGGCGAGAAGGGCGCGCAGTCGCAGTCGAAGTCGCAGTCCGACGCC
GGATGGCAATCAGGACTACGATGTGACCAGGATGCGGGAGGAGGACTTCG
AGCGGCTGGCCGTCTACCTGGTGCCGGATGTCCAGGCGGAGCGGGGACTG
CCCAATCGGGCGGACAAGACGCTGCCGCGCAGCCTGACGCTCAAGTCATC
CATGGTCTACTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCAGCG
GGGTCATCCCACGTGGCACTCGCTTTGGCCCATTCGAAGGCATTCCAACC
TCTAATTATCCCAATGATAAGAATAAGGCGCGCTATTTCTGGCGGATCTT
CAAGGACGATGACTACTATTACTTGGATGGTTCCGATCGCTCGCAGTCCA
ATTGGATGCGCTATGTGGCCTCCGCTTATAGTTTATCCGTAATGAACCTG
GTGGCGTGCCAGCACCAGGAGAACATCTATTTCTACACCACCCGCGACAT
TCTGCCCAACGAGGAGCTAATGGTTTGGTACTGCAAGGACTTCGCCAGTC
GCCTGGGCTACGATGTGGATCCTGAGACGACGATCTTCGGCGCATGCAAG
CAGCTGTGGAAGCGGAGGAGGAGGCGGACGAGAGGAGGAAGAGGCGGAGG
GAGAGGACGGAAAGCCGCGATACTCGATGCCAGCTCCGGAAATTCCACCC
GATGTGTCCGTGAGTCACATAACCTACGTCATGGGTCTTCATCTGCCTGG
GGGGAGCGGGGAAATGGTCCGCGAATGATTCGGTTGCGGGTTTCCGTTCC
GGTGCACACATCCACCACGACTGCACAGCATGCTTGCGCCGCTCAGTCAC
CGCCGTCAGCACACACCTCCACTTGCACGCCACACGCAATCAGATGTCGA
CATGCTTCGTATCTCGGCAGATCGATCCCTATGCC
UFO06327.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blimp-1-RF | 7517 | CG5249-RF | 619..1706 | 2..1077 | 4875 | 97.4 | Plus |
| Blimp-1-RE | 3929 | CG5249-RE | 189..1276 | 2..1077 | 4875 | 97.4 | Plus |
| Blimp-1-RD | 4192 | CG5249-RD | 452..1539 | 2..1077 | 4875 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5644206..5644632 | 2..428 | 2120 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5645674..5646149 | 545..1018 | 1975 | 96.2 | Plus |
| 3L | 28110227 | 3L | 5644733..5644851 | 427..545 | 595 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2510 | 22..203 | 224 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2474..2536 | 17..76 | 118 | 69.8 | Plus |
UFO06327.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:52 Download gff for
UFO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 618..1610 | 1..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:44 Download gff for
UFO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RA | 618..1610 | 1..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:18 Download gff for
UFO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blimp-1-RD | 451..1443 | 1..992 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:18 Download gff for
UFO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5644205..5644632 | 1..428 | 99 | -> | Plus |
| 3L | 5644735..5644851 | 429..545 | 100 | -> | Plus |
| 3L | 5645675..5646122 | 546..992 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:44 Download gff for
UFO06327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5637305..5637732 | 1..428 | 99 | -> | Plus |
| arm_3L | 5637835..5637951 | 429..545 | 100 | -> | Plus |
| arm_3L | 5638775..5639222 | 546..992 | 98 | == | Plus |
