UFO06330.5prime Sequence
1086 bp (968 high quality bases) assembled on 2009-08-18
> UFO06330.5prime
CAGTCGACATGCCGGAGCAGGATAATTACGATGATGAGTTGGTCTCCAGC
AATCCCAACCAACGGAACTGGCGCGGAATTCTCATCGCGCTGCTGGTCAT
CATCATTGTGCTGGCCCTGATTGTTACATCGGTGGTGCTGCTCACGCCCC
CCGATGAGGGACCGCGGGTCAAAGGGCAGCGCATCAAGCTGCAGGACATC
GTCGATGGCCTCTTCGTGCCGCAGCACTCCAACGGCAGCTGGATCGATGG
CGAGGAGTTCCTGTACCAGGACCATTTGGGTCGCATCTGTCTGCTGAATG
CAGCCAATCGCTCGGAACGTGTCCTCATGTCCAATGTGACATTTAAAACC
CTGTCACCCTTCACCTTCACCATATCGGCGGACAAGCGCTATCTGCTTCT
GGCCCAGAATGTTGTGAAACTATTCCGGCACTCGTACTTGGCCCAGTACA
CGCTCTACGACATTCAGACCAGCGAGAGCATCAAGCTGCGCCACAGTCCG
CACCAGGATGAATGGCCATACCTGCACTACGCACGATTTACGCCAGCTGG
AAACGCACTGGTCTGGGTCCAGAGCTACGATATCTATTACCGAGAGGAGG
TCCGCAGTGCGTCCGTGCATCGGATTACCCACGATGCGGTGCCCGGAGTG
GTGTACAACGGCATTCCCGATTGGCTGTACGAAGAGGAGATCCTTCATGC
AAATAATGCAATTTGGATGTCCGACAATGGCCAACTGATGCTGTATGCCA
CCTTCAACGACACGCACGTCCAGGAGCAGCACTTCGCCTGGTACGGCACG
ACGGGTCCGTCCGCCGGTGGAGCAGCAGCTGCAGCGGCAGTCGGCGCTGG
AGGAGCCGGAACTGGGAGCCCAGGAGCTGGCGGCAGTAATCCGCATGCCA
GCCTGTATCCGGAGATCAGTCCTTACGCTACCCCAGCCGGCACTCAGATT
CCCACGTAACCTACGAGTGCTGACCTAAAGATCCGCTGAAGTTCACATCA
CGACTGCATCCTCCTCGATTATAGCATGAGATCACTACCTCAGCATGCCA
GTGGTGGTCACTCGAGATCCGGGGTGCCTATCGTCG
UFO06330.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11319-RC | 7965 | CG11319-RC | 1071..2146 | 8..1065 | 4905 | 98 | Plus |
CG11319-RB | 4518 | CG11319-RB | 1071..2146 | 8..1065 | 4905 | 98 | Plus |
CG11319-RA | 4635 | CG11319-RA | 1071..2146 | 8..1065 | 4905 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6576856..6577092 | 919..683 | 1170 | 99.6 | Minus |
2L | 23513712 | 2L | 6577378..6577592 | 684..470 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 6577653..6577780 | 472..345 | 640 | 100 | Minus |
2L | 23513712 | 2L | 6579262..6579382 | 254..134 | 590 | 99.2 | Minus |
2L | 23513712 | 2L | 6580413..6580512 | 136..37 | 500 | 100 | Minus |
2L | 23513712 | 2L | 6578905..6579000 | 344..249 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:28 has no hits.
UFO06330.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:50 Download gff for
UFO06330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1064..2133 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:43 Download gff for
UFO06330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1066..2135 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:44 Download gff for
UFO06330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11319-RA | 1066..2135 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:44 Download gff for
UFO06330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6580415..6580510 | 39..134 | 100 | <- | Minus |
2L | 6586501..6586536 | 1..38 | 92 | | Minus |
2L | 6576847..6577090 | 685..927 | 99 | <- | Minus |
2L | 6577378..6577589 | 473..684 | 100 | <- | Minus |
2L | 6577653..6577780 | 345..472 | 100 | <- | Minus |
2L | 6578905..6578999 | 250..344 | 100 | <- | Minus |
2L | 6579267..6579381 | 135..249 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:43 Download gff for
UFO06330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6580415..6580510 | 39..134 | 100 | <- | Minus |
arm_2L | 6586501..6586536 | 1..38 | 92 | | Minus |
arm_2L | 6576847..6577090 | 685..927 | 99 | <- | Minus |
arm_2L | 6577378..6577589 | 473..684 | 100 | <- | Minus |
arm_2L | 6577653..6577780 | 345..472 | 100 | <- | Minus |
arm_2L | 6578905..6578999 | 250..344 | 100 | <- | Minus |
arm_2L | 6579267..6579381 | 135..249 | 100 | <- | Minus |