Clone UFO06330 Report

Search the DGRC for UFO06330

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:63
Well:30
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG11319-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06330.5prime Sequence

1086 bp (968 high quality bases) assembled on 2009-08-18

> UFO06330.5prime
CAGTCGACATGCCGGAGCAGGATAATTACGATGATGAGTTGGTCTCCAGC
AATCCCAACCAACGGAACTGGCGCGGAATTCTCATCGCGCTGCTGGTCAT
CATCATTGTGCTGGCCCTGATTGTTACATCGGTGGTGCTGCTCACGCCCC
CCGATGAGGGACCGCGGGTCAAAGGGCAGCGCATCAAGCTGCAGGACATC
GTCGATGGCCTCTTCGTGCCGCAGCACTCCAACGGCAGCTGGATCGATGG
CGAGGAGTTCCTGTACCAGGACCATTTGGGTCGCATCTGTCTGCTGAATG
CAGCCAATCGCTCGGAACGTGTCCTCATGTCCAATGTGACATTTAAAACC
CTGTCACCCTTCACCTTCACCATATCGGCGGACAAGCGCTATCTGCTTCT
GGCCCAGAATGTTGTGAAACTATTCCGGCACTCGTACTTGGCCCAGTACA
CGCTCTACGACATTCAGACCAGCGAGAGCATCAAGCTGCGCCACAGTCCG
CACCAGGATGAATGGCCATACCTGCACTACGCACGATTTACGCCAGCTGG
AAACGCACTGGTCTGGGTCCAGAGCTACGATATCTATTACCGAGAGGAGG
TCCGCAGTGCGTCCGTGCATCGGATTACCCACGATGCGGTGCCCGGAGTG
GTGTACAACGGCATTCCCGATTGGCTGTACGAAGAGGAGATCCTTCATGC
AAATAATGCAATTTGGATGTCCGACAATGGCCAACTGATGCTGTATGCCA
CCTTCAACGACACGCACGTCCAGGAGCAGCACTTCGCCTGGTACGGCACG
ACGGGTCCGTCCGCCGGTGGAGCAGCAGCTGCAGCGGCAGTCGGCGCTGG
AGGAGCCGGAACTGGGAGCCCAGGAGCTGGCGGCAGTAATCCGCATGCCA
GCCTGTATCCGGAGATCAGTCCTTACGCTACCCCAGCCGGCACTCAGATT
CCCACGTAACCTACGAGTGCTGACCTAAAGATCCGCTGAAGTTCACATCA
CGACTGCATCCTCCTCGATTATAGCATGAGATCACTACCTCAGCATGCCA
GTGGTGGTCACTCGAGATCCGGGGTGCCTATCGTCG

UFO06330.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11319-RC 7965 CG11319-RC 1071..2146 8..1065 4905 98 Plus
CG11319-RB 4518 CG11319-RB 1071..2146 8..1065 4905 98 Plus
CG11319-RA 4635 CG11319-RA 1071..2146 8..1065 4905 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6576856..6577092 919..683 1170 99.6 Minus
2L 23513712 2L 6577378..6577592 684..470 1075 100 Minus
2L 23513712 2L 6577653..6577780 472..345 640 100 Minus
2L 23513712 2L 6579262..6579382 254..134 590 99.2 Minus
2L 23513712 2L 6580413..6580512 136..37 500 100 Minus
2L 23513712 2L 6578905..6579000 344..249 480 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:04:28 has no hits.

UFO06330.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:50 Download gff for UFO06330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1064..2133 1..1058 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:43 Download gff for UFO06330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1066..2135 1..1058 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:44 Download gff for UFO06330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11319-RA 1066..2135 1..1058 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:44 Download gff for UFO06330.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6580415..6580510 39..134 100 <- Minus
2L 6586501..6586536 1..38 92   Minus
2L 6576847..6577090 685..927 99 <- Minus
2L 6577378..6577589 473..684 100 <- Minus
2L 6577653..6577780 345..472 100 <- Minus
2L 6578905..6578999 250..344 100 <- Minus
2L 6579267..6579381 135..249 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:43 Download gff for UFO06330.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6580415..6580510 39..134 100 <- Minus
arm_2L 6586501..6586536 1..38 92   Minus
arm_2L 6576847..6577090 685..927 99 <- Minus
arm_2L 6577378..6577589 473..684 100 <- Minus
arm_2L 6577653..6577780 345..472 100 <- Minus
arm_2L 6578905..6578999 250..344 100 <- Minus
arm_2L 6579267..6579381 135..249 100 <- Minus