UFO06332.5prime Sequence
1081 bp (973 high quality bases) assembled on 2009-08-18
> UFO06332.5prime
CAGTCGACATGGCGTTTGGAACAATGACGTCTTTGCTTGGCATGATCCCG
CTGCTGGCGATCGGCATGAATTTCTATCGCTATCAAAGCGTAGATCCCGA
GAACAAGGTCCAGGAGCCAACCGTCATACGTCGTCAGTATGATTTCGTGG
TGATTGGCGGCGGATCCGCTGGAGCTGTGGTGGCGAATCGCCTGAGTGAG
GTGCGCAACTGGACCGTTCTGCTACTCGAAGCCGGCGGTGATGAAACGGA
GATCTCGGACGTGCCAGCTCTGGCGGGCTATCTGCAGCTTACGGAGTTGG
ACTGGAAGTACCAGACTACGCCTTCATCCACCCGCCAGTATTGTCAGGCG
ATGAAGGGCGATCGCTGCTTTTGGCCAAGAGGAAAAGTCTTGGGCGGAAG
TTCTGTTTTAAATGCTATGGTCTATGTTCGTGGCTCCAAGAACGACTATA
ATCATTGGGCATCGTTGGGTAATCCGGGTTGGGACTACGACAGCATGCTC
AAATACTTCCTGAAATCGGAAGACGTACGAAATCCCTATTTGGCCAAGAC
GCCATACCATGAAACAGGTGGATACCTGACGGTTCAGGAGGCTCCATGGC
GTACACCACTCTCGATAGCCTTCCTCCAAGCGGGCATTGAGATGGGCTAT
GAGAACCGGGACATTAATGGAGCCCAACAGACGGGCTTCATGCTTACGCA
AAGCACAATTCGCCGCGGTGCTAGATGCTCCACGGGCAAGCCTTCATTCG
TCCAGTTCGACAGCGTAAGAATTTCGATGTCCTGCTCCATGCGGAGGCCA
CAAGGATCCTGTTCGATAAGCAGAAGCGAGCCATTGGTGTGGAATACATG
AGGGTGGCCGCAAGAATGTGGTTTTCGTGAGAAGAGAAGTGATAGCCAGT
GCTGGAGCTCTGAATACTCCCAAATACTGATGCTTCCGGAGTTGTCCCGC
TGAGCATCTGCAGGAGCACAATATTCCTTGTTATTTCCGGATCTCCCAGT
GGGCAACAATATGCAGATCAGTGGGTCTGGGTGACTCACCTTCTGTGGAC
CCTCCCTGACTGTCCCCCATCGTTCAACATC
UFO06332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45065-RA | 3359 | CG45065-RA | 1295..2365 | 7..1068 | 4995 | 98.5 | Plus |
| CG45064-RA | 3359 | CG45064-RA | 1295..2365 | 7..1068 | 4995 | 98.5 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1112..1710 | 136..740 | 245 | 70.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14876422..14877315 | 1016..126 | 4115 | 99.1 | Minus |
| X | 23542271 | X | 14877545..14877663 | 125..7 | 595 | 100 | Minus |
| X | 23542271 | X | 14865679..14865829 | 286..136 | 215 | 76.2 | Minus |
| X | 23542271 | X | 14921251..14921417 | 316..150 | 190 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:20 has no hits.
UFO06332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:27 Download gff for
UFO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1293..2377 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:39 Download gff for
UFO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9517-RB | 1289..2373 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:13 Download gff for
UFO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45064-RA | 1290..2374 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:13 Download gff for
UFO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14876355..14877315 | 126..1074 | 98 | <- | Minus |
| X | 14877545..14877668 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:39 Download gff for
UFO06332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14770388..14771348 | 126..1074 | 98 | <- | Minus |
| arm_X | 14771578..14771701 | 1..125 | 96 | | Minus |
