UFO06333.5prime Sequence
1083 bp (998 high quality bases) assembled on 2009-08-18
> UFO06333.5prime
CAGTCGACATGAAATCAAAGTACGAAAACATGAAGATCATCTACAATCGC
AGCAAGATCGGCTGGTACTGGGCTCCGTTGTTCGTATCATGCTGGTTTCT
GCTCTTCTATCTGGTGGTAATACCCAGCTTCCATCGCATGCCGCAGCTAA
AGACGCTCGAGGATGAGCGCCAGCAGCCGGGTCAGTTCATCGGGGAGCGG
GCGGAGAACACCCTTCTGAGGCTTTCCAAGATTGGACCCAAGGTCGTGGG
CAGTGCGGCCAACGAACAGGTGGCTGTTCAGTTTCTTCTCAGCGAGATAG
GTGACATCATCGACGATGCTCGAACGGATCTCTACGATATCGAGAAGGAT
GTTCAGGTTGCCTCCGGTAACTATCTTCTCTGGTCCATGGTCAATGTCTA
TCAGAGCATTCAGAATGTGGTGGTCAAGCTATCGCCGAAGAATGCAACCA
GTGAAGCTGCTCTTTTGATCAATTCCCACTTCGATTCGGTGCCGGGAAGC
TCGGGTGCCGGAGACGCCGGAATGATGTGCGTGATTATGTTGGAAGTTCT
CCGGGTTATCACGAAATACGAGACCCCACTAACCTACTCGGTTGTATTCC
TCTTCAACGGAGCCGAGGAGAATCCACTGCAGGGCAGCCATGCATTCATC
ACCCAACATCCTTGGGCCCAAAACATTAGAGCGGTCATTAATTTGGACTC
GGCTGGCAGTGGAGGACGAGAAATTCTATTTCAATCCGGACCCGATCATC
CTTGGCTCATGAAGTACTATGGCAAAAACATAGTTCATCCGTTTGCCTCC
ACTATCGGTGAGGAATTGTTCCAAAATGGCTTTGTTCCCTCAGAGACCGA
TTATCGCGTGTTCCGTGACTACGGCCATATACCCGGTCTCGATATGGCAC
AGACTTTGAATGGCTATGTATACCATACCAAATATGATCGCTTCATCTCA
TCCCGCGGCGAACTACCATGACTGGTGAAATATTTTGGCTCTGGTCAAGG
CTTGCCACGCAAAAGACTGGAGATCATCGAAACGCGAGGGACATGAATTC
TTCGAATGATGGGCGGTCTGGTCATTCGGAAAC
UFO06333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9416-RB | 2936 | CG9416-RB | 120..1193 | 9..1064 | 4915 | 98 | Plus |
| CG9416-RA | 3076 | CG9416-RA | 260..1333 | 9..1064 | 4915 | 98 | Plus |
| CG10062-RD | 2777 | CG10062-RD | 650..974 | 592..919 | 265 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19369944..19370614 | 679..9 | 3355 | 100 | Minus |
| 2R | 25286936 | 2R | 19369614..19369739 | 887..762 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 19369798..19369886 | 764..676 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 19369438..19369559 | 1001..885 | 380 | 95.1 | Minus |
| 2R | 25286936 | 2R | 19359499..19359581 | 334..416 | 235 | 85.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:20:11 has no hits.
UFO06333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:26 Download gff for
UFO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 250..1269 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:48 Download gff for
UFO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 251..1270 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:50 Download gff for
UFO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9416-RA | 251..1270 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:50 Download gff for
UFO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19369425..19369558 | 886..1011 | 92 | <- | Minus |
| 2R | 19369616..19369736 | 765..885 | 100 | <- | Minus |
| 2R | 19369798..19369882 | 680..764 | 100 | <- | Minus |
| 2R | 19369944..19370618 | 1..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:48 Download gff for
UFO06333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15256930..15257063 | 886..1011 | 92 | <- | Minus |
| arm_2R | 15257121..15257241 | 765..885 | 100 | <- | Minus |
| arm_2R | 15257303..15257387 | 680..764 | 100 | <- | Minus |
| arm_2R | 15257449..15258123 | 1..679 | 99 | | Minus |
