UFO06334.5prime Sequence
1141 bp (1013 high quality bases) assembled on 2009-08-18
> UFO06334.5prime
CAGTCGACATGGCCGGACGTGAAGCCGTGAAGCGAGCCGTACAGCAGGTG
CGCCCCATCCTGTCCGTGGACCGCGAGGAGGCCCGTAAGCGTGCCCTCAA
TCTGTACAAGGCCTGGTACCGCCAGATTCCCTACATCGTCATGGACTACG
ACATCCCCATGACCGTGGAGCAGTGTCGGGACAAGCTGCGCGAGGAGTTC
GTCAAGCATCGCAATGTGACCGACATCCGGGTGATCGACATGCTGGTCAT
CAAGGGCCAAATGGAGCTTAAGGAATCCGTGGAGATCTGGAAGCAGAAGG
GCCATATCATGCGCTACTGGAAAGAATCGCAGGATCCCAAGCCCACCGAC
TTCCTCTCAAAATTCATCCAGGGCGTTAATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACAT
ATTCTCAATAAACCCTTTAGGAAATAGGCAGGTTTTCACCGTAACACGCC
ACATCTTGCGATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCAC
TCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAG
GTGAACACTATCCCATATCACAGCTCACGTCTTTCATGCCATACGAATCG
ATGAACATCCTCAGCGGCAAGATGTATAAGCGATAAACTGTGCTTATTTT
TCTTTACGCTTAAGGCGTATATACCACTGAACGCTGGTTAG
UFO06334.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7712-RB | 612 | CG7712-RB | 93..464 | 9..380 | 1860 | 100 | Plus |
| CG7712-RA | 542 | CG7712-RA | 93..464 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10897664..10897793 | 138..9 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 10897292..10897419 | 380..253 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 10897471..10897588 | 255..138 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..290 | 942..1002 | 133 | 72.6 | Plus |
UFO06334.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:56 Download gff for
UFO06334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 83..467 | 1..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:47 Download gff for
UFO06334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 85..469 | 1..388 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:45 Download gff for
UFO06334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7712-RA | 85..469 | 1..388 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:45 Download gff for
UFO06334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10897292..10897417 | 255..380 | 100 | <- | Minus |
| 2R | 10897472..10897587 | 139..254 | 100 | <- | Minus |
| 2R | 10897664..10897798 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:47 Download gff for
UFO06334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6784797..6784922 | 255..380 | 100 | <- | Minus |
| arm_2R | 6784977..6785092 | 139..254 | 100 | <- | Minus |
| arm_2R | 6785169..6785303 | 1..138 | 97 | | Minus |
