UFO06336.5prime Sequence
1066 bp (942 high quality bases) assembled on 2009-08-18
> UFO06336.5prime
CAGTCGACATGATCGCTGTTTTTTCACTCATTGCGGCTGCTCTCGCCGTT
GGATCCCTCGTTCTGCTCCCCGTTGTCCTAAGAGGTGGATGTCTACTTGT
CGTAACAATCGTTTGGCTGTGGCAAATTCTACACTTCTGGCATTGGCGAC
GTCTGGGCGTCCCCTTTGTTCCGGCTGCCCCATTTGTGGGGAATGTGTGG
AATCTTTTGCGTGGAGCCTGCTGCTTTGGCGATCAGTTTCGCGAGTTGTA
CGAGAGTAAGGAGGCTGCCGGCCGCGCCTTCGTGGGAATTGACGTGCTGC
ACAATCACGCACTGCTTCTTCGAGATCCGGCTCTGATCAAGCGCATTATG
GTGGAAGACTTCGCTCAGTTCTCGAGCCGCTTTGAGACGACAGATCCCAC
TTGTGACACAATGGGATCGCAGAACCTTTTCTTTTCCAAATACGAGACTT
GGCGGGAGACGCACAAGATCTTTGCGCCCTTCTTTGCTGCGGGAAAGGTG
CGCAATATGTACGGGCTTCTGGAAAACATTGGACAGAAGCTCGAGGAGCA
CATGGAGCAAAAGCTAAGCGGCAGGGATAGCATGGAACTGGAGGTCAAGC
AGTTGTGTGCCCTCTTCACAACGGACATCATTGCATCCCTGGCCTTTGGC
ATAGAGGCGCACAGTCTGCAAAATCCCGAGGCAGAGTTTCGTCGTATGTG
CATTGAGGTCAATGACCCCAGGCCAAAGCGCCTCCTACACCTCTTCACCA
TGTTCTTCTTTCCGCGACTATCGCACAGGGTTGGCACCCATCTTTACTCC
GAAGAGTATGAGCGCTTTATGCGCAAGTCCATGGACTACGTTCTTTCCCA
GCGCGCGGAAAGTGGGGAAAATCGACACGATTTGATCGATATATTCTTGC
AGCTGAAGCGTACGAAGCCGGCGGAAAGCATAATCCATCCGCCAGATGCT
TTGCAGCCCAGCTGCTTTTCTGCTTTTTGGCGGCTCGACACTCGTCGTCA
CATCAGTTTGGGCTGTACGAGCTGCAGAAAACACGATTCAGACGCTGCGA
CGGAGCTCGCTGCCTT
UFO06336.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6t1-RA | 1785 | CG1644-RA | 81..1103 | 9..1024 | 4850 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21518160..21519138 | 985..9 | 4720 | 99.3 | Minus |
| 2L | 23513712 | 2L | 21283834..21284098 | 475..211 | 575 | 81.1 | Minus |
| 2L | 23513712 | 2L | 21283442..21283613 | 946..775 | 335 | 79.7 | Minus |
| 2L | 23513712 | 2L | 21283632..21283704 | 731..659 | 215 | 86.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:48 has no hits.
UFO06336.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:55 Download gff for
UFO06336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6t1-RA | 23..1065 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:54 Download gff for
UFO06336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6t1-RA | 23..1065 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:46 Download gff for
UFO06336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6t1-RA | 72..1114 | 1..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:46 Download gff for
UFO06336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21518105..21519145 | 1..1034 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:54 Download gff for
UFO06336.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21389132..21390172 | 1..1034 | 97 | | Minus |
