UFO06337.5prime Sequence
1107 bp (1003 high quality bases) assembled on 2009-08-18
> UFO06337.5prime
CAGTCGACATGGGCTTCAGTTCGCGAATGGACTGCTGCGGGCAGTTCGTC
AAGTACAGTCTTTTCATAGCCAACTTTGTGATATTCGTGGGTGGAGCGAT
TGTGTTTTGTCTCACCCTGTGGACTCTGGTGGATCGGAGTTTCGTCAATG
AGTTGCTCGGTACAAATCTTTTCTCGGGTGCTGTCTACGTCCTGCTGGTT
ACATCGATTATCATTTGTCTGGTGTCCTTTTTGGGTTGTGTTGGTGCCGG
AAAAGAAGTCAAATGCCTCCTCCTAACATATTTCATAATAGTGGCCCTAG
TTTTCGTGACCATGCTAATTGGCGGTGTCTTGGGTTACGTGTTCCGCGAA
CGAGTTCAGCAGACCATGCGGCAGGAAATGCGTTCCACGATGGCACTATA
CGGAAGCAGGAGGGAGATCACCCAGGCCTGGGATTTGACCCAGGAGCGAC
TACAGTGCTGCGGAGTGGATACGTGGCACGACTGGAATAGGTACGGACCA
GTGCCTGAGTCCTGTTGCCAGGAGCTTTTCGGTGGACAGCGTAAGGAGTG
CACAATCTTCCCGACCATTACGAATCTGTACAACCAGGGATGCCTCTATG
TGACGACCAACTTCATCAGGGATCACGCGGCGGTTATTGGAGGTACATCC
ATAGCGGTGGCCATACTGATGATCTTTGGCATGATATTCTCCTGTCTACT
ATTCAATATGATCGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCACAGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCTGCACTCATCGCAGTACTGTTGTAATCATTAGCATTCTGC
CGACATGAAGCCATCACAAAACGCATGATGACTGATCGCCAGCGGCATCA
GCACTTGTCGCCTGCTATATATTTGGCCCATGGTTAACGGGGCAAAAGTG
TCAATTG
UFO06337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp74F-RB | 1519 | CG5492-RB | 390..1101 | 5..716 | 3545 | 99.9 | Plus |
| Tsp74F-RA | 1414 | CG5492-RA | 285..996 | 5..716 | 3545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17892357..17892655 | 671..373 | 1495 | 100 | Minus |
| 3L | 28110227 | 3L | 17893031..17893222 | 278..87 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 17892716..17892812 | 375..279 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 17893297..17893381 | 89..5 | 410 | 98.8 | Minus |
| 3L | 28110227 | 3L | 17892238..17892283 | 716..671 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:02:02 has no hits.
UFO06337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:23 Download gff for
UFO06337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp74F-RB | 378..1097 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:12 Download gff for
UFO06337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp74F-RA | 281..1000 | 1..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:26 Download gff for
UFO06337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp74F-RA | 281..1000 | 1..722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:26 Download gff for
UFO06337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17892717..17892812 | 279..374 | 100 | <- | Minus |
| 3L | 17893031..17893222 | 87..278 | 100 | <- | Minus |
| 3L | 17893300..17893384 | 1..86 | 96 | | Minus |
| 3L | 17892234..17892282 | 672..722 | 94 | <- | Minus |
| 3L | 17892357..17892653 | 375..671 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:12 Download gff for
UFO06337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17885334..17885382 | 672..722 | 94 | <- | Minus |
| arm_3L | 17885457..17885753 | 375..671 | 100 | <- | Minus |
| arm_3L | 17885817..17885912 | 279..374 | 100 | <- | Minus |
| arm_3L | 17886131..17886322 | 87..278 | 100 | <- | Minus |
| arm_3L | 17886400..17886484 | 1..86 | 96 | | Minus |
