UFO06338.5prime Sequence
1074 bp (918 high quality bases) assembled on 2009-08-18
> UFO06338.5prime
CAGTCGACATGTCGATTGTAAAGAAGTTGTCCTTCGATGCTGGCTGCGAG
GAGAAGGAGAAGTACACGGCCCAAAATGGCGATGATTACTATGGCCAGGC
GCACACCGTCGACCTGGACGTGGCCAGCAAGTACTCCAAGCCCAAGGAGG
CCCACTGGCTGGTGCGGCGCATATTCTTCCTCAGCTGGATTACCAGTTAC
GATCGAGAGCAGGCGTTCGCCGATTTGATTGCCGGCATCACCTTGGGCCT
GACCATCATACCACAAAGTATTGCTTATGCCGCGCTGGCAGGACTCTCCT
CGGAGTACGGCCTGTACTCCGCCTTCATTGGCTCCATCATCTATGTTTTC
TTTGGGACGATACCACAGGTGTCCATTGGACCCACCAGTCTGATGGCCAT
TCTCACCCTGCAATTCTGCGCCGACAAACCGGTGCAGGTGGTCATCGTGC
TGGCCTTCCTCGCCGGTTTGGTGGAACTGGCCATGGGTGTGTTCCAGCTG
GGATTCATCGTGAGCTTCATACCAGCTCCGGTTACCAAGGCTTTTACATC
CGGCACTGCGCTGATCGTGGTCTTTGCCCAAATCAAGAATCTCTTAGGTG
TTCGCATAAAGGGATTCCCCTCGATCGGTGACTTTTTCACCAATATCCGG
CCCACGGATGCCGCCATGGGAATCTCGTGCATGGTTGTGCTACTTTCGCT
GCGGCTACTGTCGCAAGTGAATTTCAAGCAGGACACGCCTGTTACGCGTC
GCCTTAAGAAGATCCTGTGGTACATCAGTATTTCCCGCAATGCTCTGGTT
GTCTTCTTCACTGGCCCTTTGGTATTCATCTGGGTGAAGAAAGCTCCATT
GAGGCGGTCCCCTTTGCGCTTTCTCAAAGTTTCTCGGCCATGCACACAAT
CAAGCTGCCCCCTTCGCCTCATTATCAAATCCCACTATGTGGTTCTCGGA
TATCCTCCATGAGCTGGCACGGATTGTTGTGGTGCCAATTGTGCGGCTTT
GGCCAATGTTGTCCATTGCCCAAGCCTCGAGCAGGATGGCAATCTGATGC
TCGCATGGAATGCTTACTTTGGAT
UFO06338.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RC | 2406 | CG6125-RC | 140..1217 | 9..1072 | 4695 | 96.9 | Plus |
| CG6125-RB | 2197 | CG6125-RB | 140..1217 | 9..1072 | 4695 | 96.9 | Plus |
| CG6125-RA | 2153 | CG6125-RA | 122..1173 | 35..1072 | 4550 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15404642..15405307 | 704..39 | 3300 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15404023..15404357 | 1027..704 | 855 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:34:43 has no hits.
UFO06338.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:21 Download gff for
UFO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 133..1216 | 1..1074 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:02 Download gff for
UFO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 133..1216 | 1..1074 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:49 Download gff for
UFO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RB | 136..1219 | 1..1074 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:49 Download gff for
UFO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15404016..15404356 | 705..1031 | 91 | <- | Minus |
| 3R | 15404642..15405306 | 40..704 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:02 Download gff for
UFO06338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11229738..11230078 | 705..1031 | 91 | <- | Minus |
| arm_3R | 11230364..11231028 | 40..704 | 99 | <- | Minus |
