UFO06339.5prime Sequence
1106 bp (992 high quality bases) assembled on 2009-08-18
> UFO06339.5prime
CAGTCGACATGAATCTAGGCCACTGGAATTTTCTCCTAGCTCTAATCAGT
TTACAAACGTTTTTTAACGCCTCCGCACAGATAAGCACTGTAAATAACAG
TTCGAAGGGATCAAACAACTCAAATATTTTCCATGAAGACACATTCAATA
GCACTTCGATTGACGTTCTGGACGCCTCAATACATTCAACACTGGTTGTA
CCTCAAACATATTCGACAGAAGCTGCAACAATATCAGGTGCTAGGTTCGC
AACCTCTGTTCCTGTTCAAAGTCCTGTAGACAACCCGTTAGATCCGGCGG
ACTGTTCTCAACGGGAAAAGTACAGAAAGCAACCAGTTGCAACACCATCG
TCTCGTTTAAGAAAATGCTGCCCACATGGAGAAAACTTAAATATATATCG
GGAAAATCAAAGCGATTCGATGTGCGACAACGGGCTCTTAAGCTTCGAAC
CGACTATAATAAGTGCAGTTCTGTTCGATAACTGCATTGAAGATTTGGAG
GTTGAGACTACGCTCGACTACGACATTGGAAATCCGTGCAACAGTTCTCT
TTTGTACGACGACAAAGACGATGTTTTCTTTGTTCTGCAAGACGGTTCGT
TATTAATCATCGACAAATTTGGCAACGAATCATACACTGTGAAGGAACAT
TATTGCTTGGATATTGATAAGTCAGGACACTTGTTTGCCTTTACATGTGT
AACCCAAGTGGAAGAACAAATTGCCTTCGCAAAAGTCGTTTTTGTTGCCG
TTCTTATGCTTATATCTATGCCCTGCCTGCTATTAGTTAGTTATTTGCAC
ATGACACTTCGTTTATTGCGTAACTTGCATGGTCTCTCGCTAAGTTTGAT
GTCTCTGTGCTTGGCGTCTGGATACTTTGTGCACTCCGTTGTGCACATCT
ATGGGATCCCGAACCAAGGTTCATGGCTACGTCATACAGTTTTGTATTTT
AAGTTACTCTCTGTACTGTGCAATATGCTCATGTCTTTGAATGTGTGACA
GTGCTGCTGCATCATGCTCAAAGAGTGGGCCCACTTATTTGCGGTACGCT
GTTTGCCTTTCGAACGCCAATAGTGCCTACTGTCCAAGGATCCGATGCGC
TACTTC
UFO06339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mthl14-RA | 2091 | CG32476-RA | 149..1191 | 9..1034 | 4735 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 248202..248621 | 125..544 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 248919..249144 | 735..958 | 1030 | 99.1 | Plus |
| 3L | 28110227 | 3L | 248674..248867 | 543..736 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 248001..248116 | 9..124 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:40 has no hits.
UFO06339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:20 Download gff for
UFO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 137..1191 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:51 Download gff for
UFO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 141..1195 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:44 Download gff for
UFO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mthl14-RA | 141..1195 | 1..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:44 Download gff for
UFO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 248676..248865 | 545..734 | 100 | -> | Plus |
| 3L | 247993..248116 | 1..124 | 96 | -> | Plus |
| 3L | 248202..248621 | 125..544 | 100 | -> | Plus |
| 3L | 248919..249239 | 735..1039 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:51 Download gff for
UFO06339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 247993..248116 | 1..124 | 96 | -> | Plus |
| arm_3L | 248202..248621 | 125..544 | 100 | -> | Plus |
| arm_3L | 248676..248865 | 545..734 | 100 | -> | Plus |
| arm_3L | 248919..249239 | 735..1039 | 92 | | Plus |
