UFO06342.5prime Sequence
1107 bp (960 high quality bases) assembled on 2009-08-18
> UFO06342.5prime
CAGTCGACATGGATTTTAATAATGACTTATCGCCTATTGATATTTTGACA
TTTATAACAGATGAACTGTTGCAAGCATACAAAAGCAGTAAAGGAGAAAA
TGAAAAGGCTGGGACAATTGTCAAGTTTCTTGACCGATGGAATGACGATA
TCTCCATTGCAAAACTCAAGGATCTCACTGTTGAATTTGAATCAGATTTA
GAGTGGTTCAATGTAAGTTGCCCCTTATCGATAAAAGGACTGCAAGGAAA
AGTTATCATATTAGACTTTTTCACATATTGCTGCATTAATTGTATGCATG
TGCTGCAAGAGTTGCACTTATTGGAAGAACGCTTTCCAATAGAAAGTGGT
GTTGTAGTAATCGGTGTTCACAGTCCTAAGTTTGAAAATGAACGCAATGC
GGCAAACATTCTGTCCGCTGTACAACGATATGGAATATCACATCCCATTG
TCAATGATTCACGATCTGGAATGTGGCGCGCTCTTGGAATTCGTTGCTGG
CCTTCTCTTTTGATTCTAAGCCCGACTGGTGTTCCGATGATGTTATTAAT
GGGTGAAGGGCATGGAAAATTCCTACAGGATTTTTTTTCTTCTGCCCTAT
CGTATTTTAGCCGTCAGGGTATAATTGACCATAGGGGTTTACCTTTAAAA
TTATTTAATGACTTTCAACCAGCATCTAACTTGCGTTTTCCCGCAAAGAT
TGTTCAAGGCCCTAATGGCCTGTATGCTATTGCTGATACGGGGAACAACA
GGGTGCTTGTGCTTACAGCAGGCGGTGTGGTACAGCACAGAATTGGAGGA
CACCAGCCTGGTTTCGTGGATGGAGACCTAACAGTGGCACGGTTTAATAA
TCCTCAAGCATTGCGTTTCTTAATGAAAACGTTTTGATTGTAGCGGACAC
TAAAAACCACGCCATTCGTCAGATCTCTCTAACAAATGCAATGGTTGAAA
CTCTTGCTGGCACAGAATTCAGGAAATGATCGAAAAAGTGGACGTCTAGA
CCATTGCACCACTTTCGTTCAACGTGGGATGTGCCATATTTCGACGAAGA
GAAATGAAGTCTTTCATCTTGATGACGTAACTACAGAAAAACATACCTAT
CCATGCA
UFO06342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12547-RB | 2672 | CG12547-RB | 57..1151 | 9..1091 | 4985 | 97.8 | Plus |
| CG12547-RA | 2225 | CG12547-RA | 57..1151 | 9..1091 | 4985 | 97.8 | Plus |
| CG12547-RC | 2322 | CG12547-RC | 204..1248 | 59..1091 | 4735 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4787492..4788349 | 1044..192 | 3870 | 98.6 | Minus |
| 2R | 25286936 | 2R | 4788400..4788586 | 195..9 | 935 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 6295..6332 | 51..14 | 118 | 78.9 | Minus |
UFO06342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:19 Download gff for
UFO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 48..1147 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:51 Download gff for
UFO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 52..1151 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:56 Download gff for
UFO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12547-RA | 52..1151 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:56 Download gff for
UFO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4787438..4788345 | 196..1091 | 97 | <- | Minus |
| 2R | 4788400..4788591 | 1..195 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:51 Download gff for
UFO06342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 674943..675850 | 196..1091 | 97 | <- | Minus |
| arm_2R | 675905..676096 | 1..195 | 97 | | Minus |
