UFO06348.5prime Sequence
1080 bp (936 high quality bases) assembled on 2009-08-18
> UFO06348.5prime
CAGTCGACATGAAGCTTTGGCTAGGCATTTCTTTGGCTCTGTTGGCCCTG
GGCCAAACCCATGGTAGCATCTTTGAGAGGACTTTCAAAAGGATCCACGA
GGAGCCACCACTGCCAACCACTCAGAATCGAGCTGATGTAGTTCAAACCC
TTTGGATTGAACAGAAGCTGGATCACTTCGACCCGGAAGAAACGCGCACA
TGGCAAATGCGCTATATGCTCAACGATGCACTTTACCAGTCTGGAGCACC
ACTTTTTATTTATCTTGGCGGAGAATGGGAGATCTCATCGGGCAGAATAA
CCGGCGGTCACCTATACGACATGGCCAAGGAGCACAATGCTCTTTTGGCC
TACACAGAGCATCGCTACTATGGCCAAAGCAAGCCCTTGCCTGATCTATC
GAACGAAAACATAAAATACCTAAATGTTAATCAGTCCCTGGCCGATCTGG
CTTATTTCATAAACACCATCAAGCAAAACCACGAAGGTTTGTCCGATTCC
AAGGTCATTATTGTTGGAGGTTCCTACTCTGCCACTATGGTCACCTGGTT
CAAGAAGCTCTATCCCGATCTGGTGGCTGGAGGTTGGGCTTCCAGTGCTC
CGCTCCTTGCCAAGGTCAACTTTGTTGAGTACAAAGAAATCACTGGCCAA
TCCATCGAACAAATGGGTGGATCTGCCTGCTACAAGCGAATTGAAAACGG
CATTGCCGAGATGGAGACCATGATAGCCACCATGCGAGGTGCAGAGGTCA
AGGCCCTGCTCAAGTTGTGCGAACCCTTTGATGTCTACAGCGATCTGGAT
GTTTGGACTTTGTTCAGCGAGATTTCCGATATTTTTGCGGGCGTGGTCCA
GACTCACAATGCTGGTCAAATTGAGGTGTTTGCGAGAGCTAATGGCCCGG
TTCGAATGATCTTATTGGCGTTGCTGGATATTTTGTTGGATGTTTTCGAG
AGAGCGGTGGCAAGTGCTACGACCTTAGCTATGATGCAATTACTGCATTA
CTTCTGGACACTAATTACATTGGCAACATTATGCGTCATGATCTTCCGAC
TGCAATGAGTATGGTTGGTTCGACTCTGGT
UFO06348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3734-RB | 1536 | CG3734-RB | 45..1116 | 4..1069 | 5030 | 98.5 | Plus |
| CG3734-RA | 1619 | CG3734-RA | 128..1199 | 4..1069 | 5030 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19388515..19388750 | 392..627 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 19388811..19389043 | 627..859 | 1135 | 99.1 | Plus |
| 3R | 32079331 | 3R | 19387994..19388194 | 9..209 | 990 | 99.5 | Plus |
| 3R | 32079331 | 3R | 19388272..19388454 | 209..391 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 19389104..19389276 | 860..1031 | 585 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:18 has no hits.
UFO06348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:24 Download gff for
UFO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3734-RA | 127..1215 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:49 Download gff for
UFO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3734-RA | 125..1213 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:51 Download gff for
UFO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3734-RA | 125..1213 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:51 Download gff for
UFO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19387985..19388194 | 1..209 | 98 | -> | Plus |
| 3R | 19388273..19388454 | 210..391 | 100 | -> | Plus |
| 3R | 19388515..19388750 | 392..627 | 100 | -> | Plus |
| 3R | 19388812..19389043 | 628..859 | 99 | -> | Plus |
| 3R | 19389104..19389276 | 860..1031 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:49 Download gff for
UFO06348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15213707..15213916 | 1..209 | 98 | -> | Plus |
| arm_3R | 15213995..15214176 | 210..391 | 100 | -> | Plus |
| arm_3R | 15214237..15214472 | 392..627 | 100 | -> | Plus |
| arm_3R | 15214534..15214765 | 628..859 | 99 | -> | Plus |
| arm_3R | 15214826..15214998 | 860..1031 | 95 | -> | Plus |
