UFO06349.5prime Sequence
1080 bp (976 high quality bases) assembled on 2009-08-18
> UFO06349.5prime
CAGTCGACATGACGAGATGCAGTCTTGTATTGGGTCTCCTGCTGGCCCTG
GGCAACCTGATTCACGCCAGTAATATCACTGATAAAGTTTTTGCAGACAT
TAAAGAGGGCATTGTGGCAGCTTTCGGAGATTTCAATTCCGACGAACTCA
CGGATGTTTTTGTAATTCGCGATGGGATGAAGAGGTTGCAGATACTCTTC
GGGCACTATACGGAGCCTCTGCTTAAACTGGGACCAGACTGCCAGTACGG
AGATAAGACCATTGTTAGTGTTATACCTGGAGATTTTGATGGCGACGCCC
TGATGGACGTGCTGGTAAACCTGAAGGGGAAGGACGAGGAGACCTACGAG
GTGCACATCAACTGGGGCAATACCACCGAACTGAAGTGCTCCAATAAGTC
ACTTTTTACCAGTAAAGGAGAGGTAATGGCCCTGGACTTTAACCGCGATA
TGATTATCGATTTATACGGACTTGATTCTGCGGAAAGGCGTACATTCTGG
ATATTCAACAGCAGTAGGCTTCCGCCGGAGGCTGTACACCAAGCAGAACC
CACGGAGTTCAAGGAAAACTTAAGCATCCCCAATGCAAATGCCTATCTCG
ATCTGAACGGCGACTTCTTGGCCGATCTGTTCTTGCAGACGAAGAGCTCC
TACGAAATATGGCACGGCATCAACGAGCGAGACAAGCAGGAGAATTTCAG
CTACCAATATCAAATTAAGTTCCAGCCGATCGGAGGCAATGATTATTACA
TCGGTCACGCTGTGTTCATGGACTTCGAGCTAAAGGGCGTGCAGAACATT
GTGGTTCCGTTTTGCATCCTATCCAATTGCCGGAACTCCTCAATCATGGT
GCATGATGGCACAGATTTTCGTAATCTCCATGTAAACTTCCGCGATCCAC
AGGGCGTCACTTGGGGCTTTGTGCGCCCGTGTCAGATGATGTTTACTTGC
GAACATACCGGCAGGAGTGGGGGACTCCACTGGAGGGTATCCTCGATTTC
TGGTACTTGCAGCCACTAAAAGTGATAAGCAATGATGCACGTCCTGCTAA
GAATGTTTCCTTGGCAACTTTACAGCGCTT
UFO06349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7739-RA | 2281 | CG7739-RA | 131..1197 | 9..1063 | 4785 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15561930..15562684 | 954..201 | 3680 | 99.5 | Minus |
| 3L | 28110227 | 3L | 15562742..15562935 | 202..9 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:37 has no hits.
UFO06349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:17 Download gff for
UFO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 121..1075 | 1..954 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:09 Download gff for
UFO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 123..1077 | 1..954 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:08 Download gff for
UFO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7739-RA | 123..1077 | 1..954 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:08 Download gff for
UFO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15561930..15562683 | 202..954 | 99 | <- | Minus |
| 3L | 15562743..15562939 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:09 Download gff for
UFO06349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15555030..15555783 | 202..954 | 99 | <- | Minus |
| arm_3L | 15555843..15556039 | 1..201 | 98 | | Minus |
