UFO06350.5prime Sequence
1138 bp (1020 high quality bases) assembled on 2009-08-18
> UFO06350.5prime
CAGTCGACATGCGGTCGTGGCCTGGCCTTTTCTGGCTGCTGACCCTGGCG
CTCCTGGCGGATGGAGGTCGTCGCGAGTCCCAGCTCCGGATCGGCAAGGC
CATCAATATATTCCTGCGCTATGGCTACCTGGGAATCTCCATGCGTGTGA
TACCGCTCAATGACAACTCGGAGCCGGATCGCTGGGTGTTTAAGGAGCCC
ACCAAAAACATCTATAGGAATCTGAGTGGCCTGGCGGAGAGTCATGAAGA
CACCACGCCCGGAATCTTTCATGGAGACTTTCACATGGAGTTCTGCGAGA
ATCGGAGGCAACTGTTCCAGGCCTACTTCCGTGACTTTTCCATTGAGCGA
ATGGACAAACCGTGGGAGGCATTTACTGGCGGATGGTTTCCGGATAATGC
GGCCAAGAAGCTGGGCATCAATACATCTTTCATCCAAGGCGATTACTCGT
ATGTTTTGGTGAGGGTGGTGCGCTTCAGGGAAACGGGGCGTCTTAACGCT
GAGATTCCGGTGCACCAACCCTTGGAGCCGGATGTGCGATCGAGAATGGA
TCAACTGCAAATCGGAAATATAACTTCCGCAGTGCGATTTATGGAAGATG
TGGGCACCCACTACGTAAACTCATACACCACCGGCAATTCGCTGTATCAG
GTGTTTGTGTACAGCAGGAAGAACTACAGCATGATCAAGGAGCGAATCAA
GAGTAAAGGTCTGAACGGACTGTCCAAGTTGGATCTTTACAACTACTTTG
CGCCCTGGTTTGCCGCCCATCTGGGCCAGATTCGATCGGCTAGTGCCAAT
GCTACAGTGGAAAGATGGGCGAGAAGGAAGCTGCAGTACGAGTACTATGT
GGTCAAGTATGTGACCCTGCTGAAACTGCACGGTAATAGTACTCTACTGC
GATCCCTGGACTCGCTGCTCGGCAACGATGCCATACTGCAGTTGGACCTC
AAGTCGCTGAAGCCCATCTTCCGGGAGGAGCGGAAAGGAGAGCTGGTACA
CGAGTCTCGACAACATGTGAAGCTTCTGGGAGCTTAACATGCGCAAGTCA
TCCCACCCGAGCAGCTTCTAGAACATTCGTTGGCCCGGACCAAGTATGGT
CTAAACTAGCTAATCGTACTAATCCAACTAGCTAAGGA
UFO06350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsl-RC | 2059 | CG6705-RC | 760..1818 | 9..1060 | 5085 | 99.2 | Plus |
| tsl-RA | 1871 | CG6705-RA | 572..1630 | 9..1060 | 5085 | 99.2 | Plus |
| tsl-RB | 1375 | CG6705-RB | 76..1134 | 9..1060 | 5085 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21778375..21779204 | 1042..218 | 3860 | 99 | Minus |
| 3R | 32079331 | 3R | 21779552..21779761 | 218..9 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:19 has no hits.
UFO06350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:16 Download gff for
UFO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsl-RA | 565..1633 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:09 Download gff for
UFO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsl-RB | 71..1139 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:42 Download gff for
UFO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsl-RB | 71..1139 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:42 Download gff for
UFO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21778350..21779203 | 219..1066 | 98 | <- | Minus |
| 3R | 21779552..21779765 | 1..218 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:09 Download gff for
UFO06350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17604072..17604925 | 219..1066 | 98 | <- | Minus |
| arm_3R | 17605274..17605487 | 1..218 | 98 | | Minus |
