UFO06351.5prime Sequence
1068 bp (1000 high quality bases) assembled on 2009-08-18
> UFO06351.5prime
CAGTCGACATGGCTGACAAACAGTCCACTGAGGAAACAACCAAATCCGTC
CAGACTTTAACAGTGCCCAACCCAGCGGATAGGAAGTCGGAAAAGTCGGC
GTCAGGAAGTCTGCACTCCGGCTCAGCCGATGGTTTGGAAAATCAAGAAA
AGTCGGAAAAGCCCGGCGACCAGCCCACCGCCTATAGCATGCGACCGGCC
TTTGGGGAGATGTTTCCCCTGCCCACCATCAAGAGCATAATGAACAACGT
TATGGCCGAGAAACTCAAAGACAAAACCTATGACAAGGACGTCGCCAAGA
AGTGGACCAGTGAGATCGCCGACGAGGTGAACCAGCAGATAGCCAGCAGC
TCCCTGGTGAAGCGGTACAAGCACGTGGTCCAGGTGATGCTAGGCCAGGA
GCTGGGTGCGGGGGCCACTTACAACTCGCGCTGCTGCTGGGATTGCGACT
GCGACACTTCCGTCTCCGAGGTCTTCAGCAACACCAGTCTCTTTTGCGTC
TGTACAGTGTTTGGAACGTATCAGTACGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGC
CCATGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAAACTCACCCAGGATTGCTGAAACGAAAACATATTCTCAT
AATCTTTAGATAGCAAGCTTCACGTACACGCCATCTGCATTATTTGTAGA
ACTGCGAATCTCTGTATC
UFO06351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5359-RC | 1241 | CG5359-RC | 76..594 | 9..527 | 2595 | 100 | Plus |
| CG5359-RB | 713 | CG5359-RB | 76..594 | 9..527 | 2595 | 100 | Plus |
| CG5359-RA | 1244 | CG5359-RA | 76..594 | 9..527 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10000940..10001201 | 270..9 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 10000625..10000884 | 527..268 | 1300 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 111..178 | 69..4 | 110 | 64.7 | Minus |
UFO06351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:15 Download gff for
UFO06351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5359-RA | 75..596 | 9..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:49 Download gff for
UFO06351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5359-RA | 76..597 | 9..531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:54 Download gff for
UFO06351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5359-RA | 76..597 | 9..531 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:54 Download gff for
UFO06351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10000613..10000881 | 271..536 | 97 | <- | Minus |
| 3R | 10000940..10001201 | 9..270 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:49 Download gff for
UFO06351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5826335..5826603 | 271..536 | 97 | <- | Minus |
| arm_3R | 5826662..5826923 | 9..270 | 100 | | Minus |
