UFO06352.5prime Sequence
1141 bp (1027 high quality bases) assembled on 2009-08-18
> UFO06352.5prime
CAGTCGACATGAAATCCAATCCGGCCTCGGATCACGTCTACTTCAACGAC
GGATTCAAGTGCTCCACGATCAGCATCAGCACCAATCTCACCGAACCCAA
TGGGAGCAGCAACAGCGTGGGATCCCAGGGATCCAAGGAGTTTATACTCA
CTGAAGACGGCAAGAAGGTGAAGCCAACAGTGAGCACACTGGACTGCACA
CGCAGTTGGCTGCAGGATTGCCAGCGGCGCACCTTCAATCGCAAGACCCT
GCACAAGAGACTCCCGATCCTCGGATGGCTCCCCAAGTACAACAGCCAGG
ATGCTGTGGGCGACCTGGTGGCGGGCATCACAGTTGGTCTCACCGTCATA
CCACAGGCACTGGCCTATGCGGGAATAGCAGGACTGCCCGTAGCCTATGG
CTTGTATGCCTCCTTTGTGGGCTGCTTTGTGTACATATTCCTGGGCAGCT
GCAAGGATGTACCCATGGGGCCATCTGCGATTGTGGCCCTGCTTACTTAT
CAGGCTGCTCAAGGATCTTGGCAGAAATCGGTGTTGCTCTGCCTGCTCAG
TGGAATTGTGGAGCTGCTGATGGGCCTCTTCGGACTGGGCTTCCTGATTG
ACTTCGTCTCCGGACCAGTTTCCTCGGGCTTCACCTCCGCCGTCTCGCTG
ATCATCCTCACCTCGCAGATCCAAAGTGTGCTGGGCATCACGGCCAAGGG
CAACACCTTCGTGGAGATCTGGACGCAAGTCTTCCACAACATCGAGCACA
CAAGGGCAGGGGACACGGTACTAGGGCTAACCTGCATTGTCATCCTGCTG
TTGATGCGCAGTCTGTCTTCCTGTCGAATTGGACCAGTCGACGAGAAGGA
TGCTCATCCTTCCAGCGGGCTGTGAACAAGATCCTTTGGATCGTGGCACT
GCTCGAAATGCCATTCTGGTGGTCGTTTGCTGCATCATGGGCTATATGCT
CCACACCGAGAGCACGGAGCTCCGTTTCCTAGTGGTGGGAGAGAAAACCA
CCCGGCTCCCAGCATCCAGTTGCCACCCACATCGTTGACTGCCATGAAAC
CAGCATGGAATGGCCCGAGGGATCTGGAATTGATCCAGCATGGTCGGCTT
GGGTGTGAATCCATGATTCCGCTCATGAAACATAGCCATTC
UFO06352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Esp-RB | 2732 | CG7005-RB | 589..1733 | 9..1139 | 5065 | 97.1 | Plus |
| Esp-RA | 2371 | CG7005-RA | 228..1372 | 9..1139 | 5065 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24848533..24849196 | 396..1055 | 2905 | 97.9 | Plus |
| 3R | 32079331 | 3R | 24848215..24848462 | 148..395 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 24847238..24847376 | 9..147 | 695 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6824 | 44..116 | 113 | 61.6 | Plus |
UFO06352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:14 Download gff for
UFO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 225..1263 | 9..1044 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:25 Download gff for
UFO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 228..1266 | 9..1044 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:38 Download gff for
UFO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esp-RA | 228..1266 | 9..1044 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:38 Download gff for
UFO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24848215..24848462 | 148..395 | 100 | -> | Plus |
| 3R | 24847238..24847376 | 9..147 | 100 | -> | Plus |
| 3R | 24848533..24849184 | 396..1044 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:25 Download gff for
UFO06352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20672960..20673098 | 9..147 | 100 | -> | Plus |
| arm_3R | 20673937..20674184 | 148..395 | 100 | -> | Plus |
| arm_3R | 20674255..20674906 | 396..1044 | 98 | == | Plus |
