UFO06357.5prime Sequence
1088 bp (923 high quality bases) assembled on 2009-08-18
> UFO06357.5prime
CAGTCGACATGGTCAACTTCACCGTCGACGAGATCCGTGGCCTCATGGAC
AAGAAGCGGAACATCCGCAACATGTCTGTGATTGCCCACGTAGACCACGG
CAAGTCCACTCTGACCGATTCCCTTGTGTCGAAGGCTGGTATCATTGCCG
GAGCCAAGGCTGGTGAGACTCGTTTCACTGACACCCGCAAGGACGAGCAG
GAGCGCTGCATTACCATCAAGTCGACTGCCATTTCCATGTACTTTGAGGT
GGAGGAAAAGGATCTGGTGTTCATTACCCACCCCGATCAGCGCGAGAAGG
AGTGCAAGGGTTTCCTGATCAACTTGATCGACTCGCCCGGTCACGTTGAC
TTCTCCTCGGAGGTGACCGCCGCCCTTCGTGTAACCGACGGTGCACTCGT
TGTTGTAGACTGCGTCTCCGGAGTTTGTGTCCAGACCGAAACCGTGCTGC
GTCAGGCCATCGCTGAGCGTATTAAGCCCATCCTATTCATGAACAAAATG
GACCGCGCTCTGCTTGAGCTGCAACTAGATGCCGAGGAGCTGTACCAGAC
CTTCCAGCGCATCGTCGAGAACGTAAACGTTATCATTGCCACCTATAACG
ATGACGGAGGACCGATGGGTGAGGTTCGCGTGGATCCCTCTAAGGGATCA
GTGGGCTTCGGTTCTGGGCTTCACGGCTGGGCGTTCACCCTCAAGCAGTT
CTCTGAGATGTACTCCGAGAAATTCAAGATTGATGTTGTCAAGCTAATGA
ACCGATTGTGGGGTGAAAACTTCTTTAACGCCAAGACCAAGAAATGGCAG
AAACAGAAAGAGGCTGACAACAAACGCTCGTTCTGCATGTACATCCTGGA
CCCCATCTACAAGTGGTCGATGCCATTATGAATACAAGAAGAGGAGATAG
TACCTTGCTCGAGAAAATCGTGTGACTCTGAGCATGAAGACAAGGACAAA
GATGGCAAGCTCTGCTGAAGACTGTGATGCGCACCTCGCTGCCAGCCCGG
CGAGCTTACTCGATGATGCTATTCATTGCCGTCGCCATGGTGCCAGAAGT
ACGCATGGAGATGCTGTACGAGTTCCATGACAAGAGCG
UFO06357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 3008 | CG2238-RD | 76..1154 | 9..1071 | 4920 | 98.1 | Plus |
| EF2-RC | 2819 | CG2238-RC | 124..1202 | 9..1071 | 4920 | 98.1 | Plus |
| EF2-RA | 2771 | CG2238-RA | 76..1154 | 9..1071 | 4920 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21680757..21681284 | 754..227 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 21681344..21681559 | 226..11 | 1080 | 100 | Minus |
| 2L | 23513712 | 2L | 21679931..21680181 | 997..754 | 875 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:07 has no hits.
UFO06357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:11 Download gff for
UFO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 102..1201 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:22 Download gff for
UFO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 68..1167 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:37 Download gff for
UFO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EF2-RA | 68..1167 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:37 Download gff for
UFO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21679835..21680180 | 755..1081 | 93 | <- | Minus |
| 2L | 21680757..21681284 | 227..754 | 100 | <- | Minus |
| 2L | 21681344..21681567 | 1..226 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:22 Download gff for
UFO06357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21679835..21680180 | 755..1081 | 93 | <- | Minus |
| arm_2L | 21680757..21681284 | 227..754 | 100 | <- | Minus |
| arm_2L | 21681344..21681567 | 1..226 | 97 | | Minus |
