UFO06358.5prime Sequence
1115 bp (983 high quality bases) assembled on 2009-08-18
> UFO06358.5prime
CAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGCGCCTTGTG
CCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAGCACTTAAA
GGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGGCCACACAC
TGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGTACAAACGA
CCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAACCTAGCCGA
CAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTCAGGGGTCA
AGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATTTCCTATAC
TTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTGCGTCGTCA
GGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTGTGATCTGC
TCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAGAAGCGCGC
TGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTCAAAATGAC
CAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACACTATCAGCT
ATCAGATTAAGAGCCTTAACAAGCAAATCATTGCCGTGGTGCAGTTCATC
TTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTCAATTTGAT
GGTGGGCCCGCTGCCTTTCGGCTTTCGCATCTTGCTGGGCGTGATTGTAG
CGCTCATCATAGCCCTGGCTGAGATGTACTTCCTGGCCCAGAAGCTGCAC
GAGTACGATGAGGTCTTGGACGCGCCCAAACGTAAGCCGCAGCCATCGAC
GCCGGCTAAGCGCACCCCGCCCGCCGAGGGAAGTCAGTCCAGACATTGAA
ACCCCATGTTGACGCAGCTTTCTAGACCATTCATTTGCGCGCGGGCCCAG
GTAGTGTCATAATCATAATCATATCATATCATAATCCCTCCTAGCTAGGA
GATCTGTCATGACTAGTGCTGATCCCACAATAAAACGCCGCCGCACGAGC
GTTCTGACCATTCGATGGAGTCTGAGTCATACTGAATCTTCACGGATTCA
GCGAGCTCGAATTCC
UFO06358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7071-RC | 1766 | CG7071-RC | 785..1690 | 9..913 | 4490 | 99.8 | Plus |
| CG7071-RB | 1551 | CG7071-RB | 570..1475 | 9..913 | 4490 | 99.8 | Plus |
| CG7071-RA | 1489 | CG7071-RA | 508..1413 | 9..913 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22363530..22364132 | 9..611 | 3000 | 99.8 | Plus |
| 3R | 32079331 | 3R | 22364197..22364504 | 607..913 | 1475 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:45 has no hits.
UFO06358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:18 Download gff for
UFO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34131-RA | 498..1416 | 2..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:15 Download gff for
UFO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| muted-RA | 498..1416 | 2..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:45 Download gff for
UFO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7071-RA | 498..1416 | 2..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:45 Download gff for
UFO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22363520..22364127 | 2..606 | 99 | -> | Plus |
| 3R | 22364197..22364504 | 607..913 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:15 Download gff for
UFO06358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18189242..18189849 | 2..606 | 99 | -> | Plus |
| arm_3R | 18189919..18190226 | 607..913 | 99 | == | Plus |
