UFO06362.5prime Sequence
1109 bp (1000 high quality bases) assembled on 2009-08-18
> UFO06362.5prime
CAGTCGACATGTATCGCATCAGTCCAATTGGACGCAAATCGAACTTCCAC
TCGCGCGAAAAATGTCTGATTGGACTCGTCCTGGTAACGTTGTGCTTCCT
CTGCTTCGGCGGCATCTTCCTTCTGCCGGACAATTTCGGCAGCGATCGTG
TCCTGCGCGTCTACAAGCACTTCCGAAAGGCCGGACCGGAGATCTTTATC
CCAGCCCCGCCCCTCGCCGCACACGCCCCCCATCGCAGCGAGGATCCACA
TTTCATTGGCGATCGCCAACGTTTGGAGCAAAAGATTCGCGCCGAATTGG
GCGATATGCTCGATGAGCCACCGGCTGCGGGTGGAGGCGAACCTGGACAA
TTCCAGGTGCTCGCCCAACAGGCTCAGGCTCCAGCACCCGTCGCCGCTCT
GGCGGATCAGCCGCTGGATCAGGACGAGGGACACGCCGCCATTCCCGTTC
TGGCCGCCCCAGTTCAGGGGGACAATGCCGCCAGCCAGGCCTCGTCCCAT
CCACAAAGTTCCGCCCAGCAGCACAACCAGCAGCAACCACAACTGCCATT
GGGTGGCGGTGGCAATGATCAGGCGCCGGACACACTGGACGCCACACTGG
AAGAACGGCGTCAGAAGGTCAAAGAGATGATGGAACATGCGTGGCACAAT
TACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCTTTCGCAGCG
ACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTGCTACAATCG
TCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAAGAATATCGC
GAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACAATATCAGCGC
AGAGTTGAGTGTTTTCGAAACGAACATTCGTTTTGTTGGCGGCATGCTGA
CGCTGTACGCCTTTACGGCGATCCACTGTACAAGAAAAGGCCCAGCACGT
TGCCGACAGCTGCTGCCCGCCTCCAACACCACCGGGTATCCCTACCCGCT
GGTCAACACAAGACCGGTGTTGCAAGAACCTACGCTGGCATCCGCGCAGT
CTTATCCTATCGATTTGCACTGCATCTGGATTTGCTATCTGACGACATAC
GGAATCCTA
UFO06362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 3808 | CG42275-RO | 303..1412 | 8..1098 | 4945 | 97.5 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 348..1457 | 8..1098 | 4945 | 97.5 | Plus |
| alpha-Man-I-RM | 3961 | CG42275-RM | 456..1565 | 8..1098 | 4945 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10323566..10324184 | 626..8 | 3095 | 100 | Minus |
| X | 23542271 | X | 10278791..10279193 | 1020..625 | 1625 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:34:39 has no hits.
UFO06362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:05 Download gff for
UFO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RE | 447..1564 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:01 Download gff for
UFO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 447..1564 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:47 Download gff for
UFO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 448..1565 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:47 Download gff for
UFO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10278701..10279191 | 627..1098 | 94 | <- | Minus |
| X | 10323566..10324192 | 1..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:01 Download gff for
UFO06362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10172734..10173224 | 627..1098 | 94 | <- | Minus |
| arm_X | 10217599..10218225 | 1..626 | 99 | | Minus |
