UFO06363.5prime Sequence
1104 bp (972 high quality bases) assembled on 2009-08-18
> UFO06363.5prime
CAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAACGCAAGCGG
GCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCAGTTCCATC
GATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAAGAAGCCCA
CGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGCAGGCACAG
ATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAGCCCACTGC
GGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCGACCCAAAC
CCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCGGACGTACC
ATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATACGCGCCAA
GAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACGGAGTGAAT
CGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACGACCGCATA
GCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTCCACGAGCC
CGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAGCCAGCTGG
AGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGGGCATCTCG
TCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATGCCGGACGA
TGTGCCTGCCATGGGAGTGGTGGGACTCAGTTATACTGACCCAGGATCTG
GAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAACAGCCAT
AACCAACCTTATAGAGCATCCCACACAAATGAAGCCGCCAAATGAGCCCT
TGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCGCAAAAAG
CTTCGTCACCAGAACCGTCGCGAGGCCTGGAAAGAGGAGCAGAGAAGATC
CGACTGGGGTTTGGTGGCCCACCAGAGCCGAACTGCGCATATCCAACCTG
ATGCGTGTGGCTTGGCTCGAAGCGTACAAGATCGACAAATGGAGCAGCAT
GTGGCCGACGATGCAGCGGCGAGGCCACGAGATGCACATGCCGCAGCTGA
CACG
UFO06363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prp3-RB | 2082 | CG7757-RB | 320..1369 | 9..1053 | 4965 | 98.7 | Plus |
| Prp3-RA | 2148 | CG7757-RA | 386..1435 | 9..1053 | 4965 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19910688..19911519 | 9..841 | 4115 | 99.9 | Plus |
| 3L | 28110227 | 3L | 19911574..19911743 | 842..1009 | 645 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:05 has no hits.
UFO06363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:04 Download gff for
UFO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7757-RB | 275..1333 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:20 Download gff for
UFO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp3-RA | 386..1444 | 9..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:36 Download gff for
UFO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prp3-RA | 386..1444 | 9..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:36 Download gff for
UFO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19911574..19911800 | 842..1066 | 92 | | Plus |
| 3L | 19910688..19911519 | 9..841 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:20 Download gff for
UFO06363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19903788..19904619 | 9..841 | 99 | -> | Plus |
| arm_3L | 19904674..19904900 | 842..1066 | 92 | | Plus |
