UFO06367.5prime Sequence
995 bp (614 high quality bases) assembled on 2009-08-18
> UFO06367.5prime
CAATCCACCATGCAAATAATTGGGAATTGGATCATTAAACTGCTCACACA
CAAGTACCTGTGCCAGCCAAGGGTGTACTCTCTATACTACAGTACCCTTA
AAGATGCGGCTAATGACCTTCCCTTGGCAACAGGATACCAGCCACAACCA
GTGGAAAATGCTTACTGGGAGCGGGAGCATCCCCGGGCAAATTTGCCCAA
GGCTTCAGCCAGCAGTTGCAAGCGGGGGACCTATCGCATGCTTCTACCGC
CACCAAATGTAACCGGGAATCTACATTTGGGCCATGCACTGATGGCCACC
GTGCAGGATGTGATTGCCCGCCAGCGCGAACAGCTTGGCTACCAGGTGGA
CTGGGTACCAGGCACAGATCACGCGGGTATCGCCACCCAGGTGGTCGTAG
AGCGCACGATTGCCGCTTCTCAGGCGAAAACCCGTCATGAATTGGGACGT
TCTGCTTTTCTGGACGAAATATGGCGCTGGAAGGCGGAAAAGGGTGCTGG
TATCGTACAGGATCTCCGCCAACTCGGCTGTAAACTGAATTGGCAACGAG
AATACTTCACAATGGATGAGCAGCAGGCGCATGCGGTCAACGTAGCTTTC
GAGCGACTCTTTGAAGAAGGCCTAATTCAGCGGCGCAACTCGGTTGTCAA
CTGGTGCACCGCTCTACGTTCCGCGATATCTGATATCGAGGTGGACAGTG
TAGAGATCACGGAGCCGGTAGAGATATCCGTTCCAGGCTACGATCACAAA
GTACTCTTTGGCAGAATGTACGATTTCGCCTATCAGGTATTGGATGGTGA
AGCACTGCCCATGGTTCGGTTGAGACATTGTGGTGTCTACCACTACACAG
ATACTATTTGGGGGATGTAGCTGCTCAATCATCCCCTGGATCCGCGCTAC
ACCAATACTCAACATGATCAGGTTATCTCAGCATCCTTTTCGTGATGAAC
CATTCCACTCATGTCCATATCACGTGGACACCCAGCTTGGCCCGG
UFO06367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5660-RB | 3254 | CG5660-RB | 144..1127 | 10..979 | 4150 | 95.7 | Plus |
| CG5660-RA | 3148 | CG5660-RA | 38..1021 | 10..979 | 4150 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8963721..8964466 | 845..102 | 3510 | 98.7 | Minus |
| 3L | 28110227 | 3L | 8964528..8964626 | 108..10 | 420 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:34 has no hits.
UFO06367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:02 Download gff for
UFO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5660-RA | 31..1014 | 3..973 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:07 Download gff for
UFO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5660-RA | 31..1014 | 3..973 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:07 Download gff for
UFO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5660-RA | 31..1014 | 3..973 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:07 Download gff for
UFO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8963582..8964464 | 104..973 | 95 | <- | Minus |
| 3L | 8964533..8964633 | 3..103 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:07 Download gff for
UFO06367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8956682..8957564 | 104..973 | 95 | <- | Minus |
| arm_3L | 8957633..8957733 | 3..103 | 92 | | Minus |
