UFO06368.5prime Sequence
1098 bp (987 high quality bases) assembled on 2009-08-18
> UFO06368.5prime
CAGTCGACATGACAATGTCCTCGACGTCGACAGCGACTGCGACGTCGACA
GCGACTGCGACGCTGGACGAGGCGAACGCCACTGTTGGCGAAATGTTTTC
GGATGCGGATATGGCGGAAGTGCGGCATGTTGTCCAACGCATTTTGGTGC
CGTGCGTTTTTGTTATTGGACTATTGGGAAATTCAGTGAGCATTTATGTT
TTGACGCGAAAGCGCATGAGATGCACGACGAACATATATCTAACGGCACT
GGCCATTACGGATATTGCCTACCTGACGTGCCAGTTAATCCTGTCACTCC
AGCACTATGACTATCCCAAGTATCATTTCAAGCTCTACTGGCAGCTCTAT
GGCTATTTTGTCTGGCTGTGCGACAGTTTCGGTTACATCTCAATTTACAT
AGCCGTGTGCTTCACCATCGAGAGATTCATTGCGATACGCTATCCGCTCA
AGAGGCAAACATTCTGCACGGAATCGCTGGCCAAAAAGGTGATAGCAGCG
GTGGCCATCTTCTGTTTGCTGTCCACACTATCGACGGCATTCGAGCATAC
AATTACGATTGGTACTAGGCAGATTGATGACGCCTACCAGCCGTGCAACC
AAACGGTGGCCAACATCTCGCCCATGCCGCCGCCACCCGTGGCAGTCACG
CCCCCACTGGCCACGCCCCCGCTGCCCACGCCGGCGACCATTTGGCAATC
GCCGGACTCCGCCATGGAGTCCACGACGTCCGGCAGCTCTAATCAGCTCG
TCGACTGGGGCAGTGGCAGTGGTGATGGAGAGCCAGAGAACATTCCACGA
CATCGCCGTCACTGGCAGTCATCTGGATTTGTGACGCTGCCCACACTGAG
AAAACGCTGGAGGAGCAGGATCAAAGTGGCAGACGCGGCCCAGAGGTCAG
GGGTCACAGAGAGTTTGCTGCATTGTGGGCGTCGCAGCGCAGCGCTGAAA
TCACAACATCAACAATACGATGCATTCGTCATTTACGTACGAATACTGTC
AAATGTGACCTATTACATTCTGGTCTTGCGAATCGGGACTTGATAGCAGA
CGCTATCTGTGGAGCTGATCAGCTGCCGGCTGCTGCATGCACTCACCT
UFO06368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Proc-R-RE | 2784 | CG6986-RE | 453..1522 | 8..1063 | 4805 | 97.7 | Plus |
| Proc-R-RD | 3005 | CG6986-RD | 674..1743 | 8..1063 | 4805 | 97.7 | Plus |
| Proc-R-RC | 2672 | CG6986-RC | 341..1410 | 8..1063 | 4805 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4726424..4726714 | 496..786 | 1455 | 100 | Plus |
| X | 23542271 | X | 4723367..4723567 | 8..208 | 1005 | 100 | Plus |
| X | 23542271 | X | 4725021..4725196 | 208..383 | 880 | 100 | Plus |
| X | 23542271 | X | 4726873..4727062 | 785..969 | 660 | 94.7 | Plus |
| X | 23542271 | X | 4726235..4726352 | 381..498 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:11 has no hits.
UFO06368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:00 Download gff for
UFO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6986-RC | 335..1423 | 1..1076 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:18 Download gff for
UFO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Proc-R-RB | 626..1714 | 1..1076 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:50 Download gff for
UFO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Proc-R-RC | 337..1425 | 1..1076 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:50 Download gff for
UFO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4726236..4726352 | 382..498 | 100 | -> | Plus |
| X | 4723363..4723567 | 1..208 | 98 | -> | Plus |
| X | 4725022..4725194 | 209..381 | 100 | -> | Plus |
| X | 4726427..4726714 | 499..786 | 100 | -> | Plus |
| X | 4726875..4727101 | 787..1004 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:18 Download gff for
UFO06368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4619055..4619227 | 209..381 | 100 | -> | Plus |
| arm_X | 4620269..4620385 | 382..498 | 100 | -> | Plus |
| arm_X | 4617396..4617600 | 1..208 | 98 | -> | Plus |
| arm_X | 4620460..4620747 | 499..786 | 100 | -> | Plus |
| arm_X | 4620908..4621134 | 787..1004 | 94 | -> | Plus |
