UFO06369.5prime Sequence
1084 bp (952 high quality bases) assembled on 2009-08-18
> UFO06369.5prime
CAGTCGACATGTACGAACCGGGTACGAGCAGCGAGGAGGGTGTTGTATCT
GAGACTGAGCCCGAGCCAGCAGGAGTATCTGTATCTGTATCTGTATCTGT
ATCTGAGGAGCCATCGGCGAGCCGCTCCAGCCGGCTGACCGTCATTACCG
TGGTCGTGGTCGTCGTCGCCGTTCGCGCCATGAGTCGTCTGAGGCGTGAA
AGCAGCCGACAAAGCGTCATCACCGTCGAGCTGATACAGTTCATCATTCA
GTATCGCGCCAAGGAGACGCAGGAGAAGAAGAAAAGGCGCCTGGCCGACG
AGGACGATGAGCTGTCGGAGGTGCAGCCGGATGCAGTGCCGCCGGAGGTG
CGCGAGTGGCTGGCCTCCACCTTCACCCGCCAGATGGCCACCAGCCGGCG
CAAGAGCGACGAGAAGCCCAAGTTCCGTTCGGTGGCCCACGCCATCCGTG
CTGGCATCTTTGTGGACCGCATGTATCGCCGCGTCTCCAGCTCGGCCCTA
ACGGCCTTCCCACCGGACGTGGTCAGGCTGCTCAAGAACCTGGACGACTG
GACCTTCGATGTGTTCGCCCTGACGGAGGCAGCCAGCGGCCAGGTGGTCA
AGTACGTGGCCTATGAGCTCTTCAACCGCTACGGCTCGATTCACAAGTTC
AAGATTGCGCCGGGAATTCTGGAGGCGTTCCTGCATCGCGTGGAGGAGGG
CTACTGCCGGTATCGGAATCCGTATCATAACAATCTGCACGCCGTGGACG
TGATGCAGACGATCCACTACTGCCTGTGCAACACGGGTCTGATGAACTGG
CTGACGGACCTGGAGATCTTTGCCTCGCTGCTGGCCGCCCTGCTCCACGA
TTACGAGCACACCGGCACCACCAATAACTTCCATGTGATGTCCGGTTCGG
AGACGGCACTGCTGTACAACGATCGGGCTGTGCTGGAAAATCATCATGCC
AGCGCCAGCTTTCCGCTGCTGCGCGAAGAAGAATACAACATACTGTCGCA
TTTGTCGCGCGAGGAGTTCGCGAATTGCCCGCTGGTTATCGAAATGTACT
CGCACGAATTGACAATACTTTCACATGAGCCATG
UFO06369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde1c-RC | 4561 | CG44007-RC | 341..1389 | 8..1052 | 5035 | 99 | Plus |
| Pde1c-RL | 4894 | CG44007-RL | 1718..2496 | 278..1052 | 3655 | 98.3 | Plus |
| Pde1c-RJ | 5321 | CG44007-RJ | 2145..2923 | 278..1052 | 3655 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11817981..11818495 | 1046..535 | 2340 | 97.9 | Minus |
| 2L | 23513712 | 2L | 11821006..11821285 | 287..8 | 1400 | 100 | Minus |
| 2L | 23513712 | 2L | 11818600..11818851 | 536..285 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:38 has no hits.
UFO06369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:59 Download gff for
UFO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 336..1402 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:31 Download gff for
UFO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 336..1402 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:34 Download gff for
UFO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde1c-RC | 336..1402 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:34 Download gff for
UFO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11817961..11818493 | 537..1063 | 97 | <- | Minus |
| 2L | 11818600..11818849 | 287..536 | 100 | <- | Minus |
| 2L | 11821007..11821289 | 1..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:31 Download gff for
UFO06369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11821007..11821289 | 1..286 | 98 | | Minus |
| arm_2L | 11817961..11818493 | 537..1063 | 97 | <- | Minus |
| arm_2L | 11818600..11818849 | 287..536 | 100 | <- | Minus |
