UFO06370.5prime Sequence
1078 bp (987 high quality bases) assembled on 2009-08-18
> UFO06370.5prime
CAGTCGACATGGAATTAGAGAAAGTAAAGATAAACAGCCTTCATTGTAAT
GATGCTGTGCTCTCTTCACTTCAAGCATCCCCTTCTGGGACATCCCCTCA
GAGCGTTCCTTCAAAGGCGAATGTCGTCACCGAGGCTTCTATTATCGAAA
AGACGAATCAACCACATAATGTTCAGGAAGATAATAACTACAATAGAGAT
TGCGACAGCCCCGAAAGTTCTAGCTGGGAGCAGGATAAGGAGTTGGATGA
TCTGCGGAACTTGCACTCCTCCTCTCTAACAAACAGCGTAGTGGTGGGGA
AATCGACTGGCTCGCTAAACGGCGTCTACTCTATCACATCAGTCACTTCC
GAAACTAAAACGCTTGAAAGTGTTGTCACGACCAACTCTGCTAGTGGGTC
GGCATGCTTAAGCAATACACCCACCGCTGATCACATAAAGAAACGTATCC
CAAGCAGTCGAACGCCGACAAGAAAGGCACTGAGAATCAAATTCTACCGG
AACGGGGATCGTTTTTATCCGGGTATAACAATTCCCGTGTCTAACGAACG
GTACAGATCCTTTGAAAGACTTTTTGAAGACCTAACCCGTCTGTTGGAAG
AGAATGTAAAGATACCAGGTGCTGTTCGCACCATCTACAACTTGTGTGGG
AAGAAGATTACCTCTCTCGATGAATTGGAAGATGGACAGAGCTATGTTTG
TTCCTGCAATAACGAGAATTTTAAGAAGGTTGAGTACAACACTGGTTCCC
AGCCTTTGTCCAATCTGCCGCTGAGCAATAGTCGTTCCAACAGTCATCGA
TTGGCTAAGTGTCGACCATCGTCTCCCCTAAAAATGGCTTGCTTGCAGCA
GCAGTCCTTTCCCAGCTTGTGGCGGAGGACGGGAAACGGAGTCCACTTAT
CGCTTCCAGATTAGCGATCGAGTTACAGTGGTTCATCCTCGTATTGTGAC
GCTGATACGTATGACTAAGTCGCGGCGTATTATGCGATTATGCTAACAGC
GTACAGGCCGAGCTCGATCATGTGCTGACGCCATACGCAGTGGTCGCTGA
CACGGCAGTGAAAGATTCATTTCCGATC
UFO06370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17528-RD | 4686 | CG17528-RD | 416..1482 | 8..1055 | 4805 | 97.8 | Plus |
| CG17528-RC | 2645 | CG17528-RC | 210..1276 | 8..1055 | 4805 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4819288..4819936 | 656..8 | 3200 | 99.5 | Minus |
| 2R | 25286936 | 2R | 4818887..4819231 | 991..655 | 1350 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:00 has no hits.
UFO06370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:10 Download gff for
UFO06370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 204..1264 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:33 Download gff for
UFO06370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 207..1267 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:01 Download gff for
UFO06370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17528-RC | 207..1267 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:01 Download gff for
UFO06370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4819288..4819939 | 1..656 | 98 | | Minus |
| 2R | 4818821..4819229 | 657..1048 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:33 Download gff for
UFO06370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 706326..706734 | 657..1048 | 95 | <- | Minus |
| arm_2R | 706793..707444 | 1..656 | 98 | | Minus |
