UFO06371.5prime Sequence
1059 bp (953 high quality bases) assembled on 2009-08-18
> UFO06371.5prime
CAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGGATAAAGTG
CCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACACAGCTATGG
CGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCCCAGAGCAG
TTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTGTTAAAGAT
GGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACTGTTGGAGG
CAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAATGGAGGAA
GACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTTTTGTGACG
ATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATATCAGCACAA
GAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTCCGCGAATG
CAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATCCTTACTTT
TATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAGATTGCTGT
GGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAACGGTCACG
ATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCGGCATTTTT
ATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTGGACAGAGA
TACTGTGCCTGCTTTACCCGCCAATACAACAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCCCCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAGCGA
GCTCGATATCAAATTACGGCGGCTGCGATCATCGGAGTACTGGTGTTATT
CATAGCATTCTGCCGACATGAAGCCATCCACACGCATGATGACTGATCGC
CAGCGCCAT
UFO06371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NijA-RA | 1134 | CG6449-RA | 234..956 | 9..731 | 3600 | 99.9 | Plus |
| NijA-RB | 1146 | CG6449-RB | 234..968 | 9..731 | 3470 | 98.2 | Plus |
| NijA-RD | 1086 | CG6449-RD | 374..908 | 197..731 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10695024..10695417 | 542..149 | 1955 | 99.7 | Minus |
| 3L | 28110227 | 3L | 10694538..10694733 | 731..536 | 965 | 99.5 | Minus |
| 3L | 28110227 | 3L | 10695629..10695705 | 150..74 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 10696578..10696644 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:50 has no hits.
UFO06371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:07 Download gff for
UFO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijA-RA | 221..959 | 1..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:35 Download gff for
UFO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijA-RA | 224..962 | 1..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:41 Download gff for
UFO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NijA-RA | 224..962 | 1..740 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:41 Download gff for
UFO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10696579..10696650 | 1..74 | 94 | | Minus |
| 3L | 10694532..10694726 | 543..740 | 97 | <- | Minus |
| 3L | 10695024..10695415 | 151..542 | 99 | <- | Minus |
| 3L | 10695629..10695704 | 75..150 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:35 Download gff for
UFO06371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10688729..10688804 | 75..150 | 100 | <- | Minus |
| arm_3L | 10688124..10688515 | 151..542 | 99 | <- | Minus |
| arm_3L | 10687632..10687826 | 543..740 | 97 | <- | Minus |
| arm_3L | 10689679..10689750 | 1..74 | 94 | | Minus |
