UFO06372.5prime Sequence
1105 bp (1008 high quality bases) assembled on 2009-08-18
> UFO06372.5prime
CAGTCGACATGAAATTCAATTTGGTGCAGACACTGGTCTTCACTTTGTGC
CTCATCAGCGTGCAAATATATGGCATTCAAGATGCCAGTGGCAAGCGGAT
CGTTAGCAAGTACGAGCGCATCATGCAGATGTATCCGCAGCTCTCCTCCG
GCGCAGGCGAATCCTCGCAGTGGCGGGCGGCCGAGAAGGACAACCAGCGG
CATCCTTGCAGACGCGACTGCGCCGACAAGCAGCCGATGACCTGCTACTA
CTACATGGTGGTCCACTACGACGACACGATGGCGGAGACCTGCAAGCGCT
ACCTCCAGTCCAAATTCCGCTTCAAGCTGAGCGGCAAGGAGTACATCGAT
GGGATTGCGCTGGCAACGCAGCTGGCGGCGAACGACGACTGCAAGTACGC
CGATGGACTGGAGAGCGAGGTGATGGTGGTCAATGGCCAGCTGCCGGGGA
TGAACATCGAGGTGTGCTACGGCGACACCGTGGTGGCGGACGTGATCAAC
AGCATGCACGAGACGACGACGATCCACTGGCACGGGATGCACCAGCGACT
AACGCCCTTCATGGACGGAGTGCCCCACGTCACCCAGTATCCAATCGAGG
CGGGTCAGGCGTTCCGCTACCGCTTCGAGGTGGATCACGGCGGCACCAAC
TGGTGGCACAGCCACACGGAACATCAGCGGGCCTTCGGACTCGCTGGGCC
ACTGGTGGTGCGAATGCCGCCCAAGCTCAATCCCCACGCGCATCTCTACG
ACTTCGACATGTCGGAGCACGTGATCATGATCCAGGACTGGGTGCACAAC
TTCGTGGAGAGCGTGGCCCGAGAACATTCTGATCAACGGGCGGGGCAGGA
TCTGAAGAAGGCGTCAAGGCCGCCAAGCCCACGCTCTATGCCTACTTTCC
GGTGGTCAGGGCGGACGCTATCGCTTCCGGTGATCTTCAACGGCGTTTCG
ACTGTCCGATCAGCTTCAGCATCGATAGCACGACTGTGTGATCGCAGCGA
TGGCACGACATGAGCCGGGGAGGTGCACGGATCATGTTCCACGGCCGCGA
TCGCTTCGACTCTGCTGCACGCAACAGAGGTGACACTACTGATCGGGTGA
GGCTC
UFO06372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32557-RA | 2131 | CG32557-RA | 122..1201 | 8..1072 | 4905 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17854100..17854741 | 943..305 | 2950 | 99.1 | Minus |
| X | 23542271 | X | 17855226..17855454 | 308..80 | 1145 | 100 | Minus |
| X | 23542271 | X | 17855931..17856008 | 85..8 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:06 has no hits.
UFO06372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:25:07 Download gff for
UFO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 108..1199 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:43 Download gff for
UFO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 114..1205 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:17 Download gff for
UFO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32557-RA | 114..1205 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:17 Download gff for
UFO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17854101..17854737 | 309..942 | 99 | <- | Minus |
| X | 17855226..17855452 | 82..308 | 100 | <- | Minus |
| X | 17855935..17856012 | 1..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:43 Download gff for
UFO06372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17748134..17748770 | 309..942 | 99 | <- | Minus |
| arm_X | 17749259..17749485 | 82..308 | 100 | <- | Minus |
| arm_X | 17749968..17750045 | 1..81 | 95 | | Minus |
