UFO06377.5prime Sequence
1100 bp (983 high quality bases) assembled on 2009-08-18
> UFO06377.5prime
CAGTCGACATGTGGGCTCCCGGCGGGGATGTTAAATCAATAGTGGTGCTG
GCGGCACTGACGGCGCTTCTCTGGGCCCCACTTGAGGTCCTTGGGCGGAA
GCACCATCTGGAAGTGAGGAATGACCGTCGCCAGTACATCGCACTCAGCA
CCTTTGGATTCTACACTAATGGCCATTTGGATGTGCAGCTCAGCAAATTG
ACTTTTGACAATGAGCAGTCTACAGATTTGATGGGTCTGTCGCTGGATAA
GACCACTATTGACCAGCTTAATCCCTATTTGGACTCGCATCAAAACAAAT
GCATTCTCGAGGAATCACCTAAATCCCAGATCAGCGGACCCATTCTCTTC
TTCGTGCTGGACCTCAAGGAGCTTAAAGTTCGTGTTAAGTGCTCCCCCGA
ATGGCACAATATGCACATCTACAACCAAATCCCGTCCAGAACCAAGCGGC
ACTCACACATGGCCAAGGTCAGCGATTCGGTTCTGTTTCGCCAGACCCGC
GCTGCCCAAGATTTCTCCGCCGAGGGGCCAGATGAGTCCATGGAGGATCC
CTTGGAGCAAGAACCGACGGATTTAAAGTCTTCCTCGCCTGCTGCGGTTG
CAGGCAAAATTGAGCTGCCCAAAGATGAAGGTGCACCCAAGGTAGATGCT
CCTGCCCAAAATGTTGATGCTGTCAAAGAGGAGTCTGTTCCCAAGCCAGA
AGTGGCTGCCAATCAGAATATTTCTGACAAGCAGGAACTGCCTCCCCCAC
CAAATGCCGCCCCTAAAGTGGAGGAGCCGTTAAGAGTGAACAGAAGCAGG
AGGAAGCCCCCGCTGAAAAGGATGAAACCCCTTCGAAAAGGAGGAACCCC
AGCAAAGCAAGTATCCGTAGAGAGCCAAAGTCGCAGCCCACCACTGGCCG
TAAATAGCCCAGCAGCTGCTCGTCCCTAGATGATACTGAGTTGACAGAAA
ATGAGCAACGATACGACGCAGCTCCGGAACCCTTTCCCCACGAGCGATCG
AGAGATCTATGGACCGACTCCTTAGCATCGCAGAAATCTTGCAGATCGAC
ATGCGCTGTCAGGAACATCACATTTACTACTAGGCTCATTCCTATGATGT
UFO06377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12121-RA | 2954 | CG12121-RA | 266..1261 | 9..989 | 4590 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9230989..9231558 | 939..377 | 2500 | 98.8 | Minus |
| X | 23542271 | X | 9231621..9231767 | 376..230 | 735 | 100 | Minus |
| X | 23542271 | X | 9231828..9231939 | 230..119 | 560 | 100 | Minus |
| X | 23542271 | X | 9232003..9232113 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:09 has no hits.
UFO06377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:56 Download gff for
UFO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 261..1268 | 9..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:03 Download gff for
UFO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..1273 | 9..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:25 Download gff for
UFO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12121-RA | 266..1273 | 9..998 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:25 Download gff for
UFO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9230989..9231558 | 377..939 | 98 | <- | Minus |
| X | 9231621..9231766 | 231..376 | 100 | <- | Minus |
| X | 9231828..9231938 | 120..230 | 100 | <- | Minus |
| X | 9232003..9232113 | 9..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:03 Download gff for
UFO06377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9126036..9126146 | 9..119 | 100 | | Minus |
| arm_X | 9125022..9125591 | 377..939 | 98 | <- | Minus |
| arm_X | 9125654..9125799 | 231..376 | 100 | <- | Minus |
| arm_X | 9125861..9125971 | 120..230 | 100 | <- | Minus |
