UFO06378.5prime Sequence
1154 bp (1035 high quality bases) assembled on 2009-08-18
> UFO06378.5prime
CAGTCGACATGGCCGCTGAAAGGCAGGAGAAACGAGGCGAGGAGGAGACG
CAGCCCAGGTTGCCCGACCTCGGCTTTGTGCGCGACAAGCTTCAGAAGTT
CCAGTCCAAGATGCTGACCGACTTCGAGCAGCGGCTGTCCTGCATGGTAG
AGGATGTGCTGCAGGATCTGCGACAGCGCGAGTTGCGTGCCCACGAGTTC
CCCAACTTCGAGAGATCCGATCGGAAGAGCACCTGGCACAATCGCGTGAC
CAGTCAAGCGCCAGCAGACGTCAGCGACTCCACAAATGGCCATGCAAATG
GCACGCATCCAAGGCCACCGATCCAAAGCGAAACATCCGCTCGTAAGCAG
CGACGACAACTGCCCGAAAAAGTGTTCGTTGCCCGGGAATCGTACCTCAC
CGCTCTGCTGCAGGTGGAGCACATGCGCACCATCTACCACATCTTTTATA
TTATTCTGGTCATGTTCCTGCTGAACGTGATCTGCTACGATTACTTTGTT
GATGGCCGCTTCGATCTGGGACTTGGCACCTTCCGCGGCGGACTGCGCCG
CCTCCACTGGGTGATGGGCGTTTGGCTGCTGGAGCATGTCTTCGTCCTGG
CGCTCTATTTCGCCTTCCGCGGATGGGCCTTGGTCAGGCACAAACTGAAA
CCGCACAGTTCTCTCCAGCGCTTTTGGTCGCACAGCTGTCTCATCCTGTA
CATCAGCTCCCAGCTGGTCTTCTGTTTCGTGTCGACTTCGCTGTGCCTCA
AGTTCAACCTGCCCTTTGTGAGTGCGTGTATCCTGTTGCTCGAGAGCACG
CGACTGCTGATGAAGATGCACGCCTTTGTGAGGTACAATGCTGAGCGCGT
TCTGAATGGCAAGGCCAAGAAGAAGATGCGGAGGAGGAGAAGTGCAGTGA
GCGACCGTTTGTGCCGCCGCTGAGCTGTACACGTACTTTTTGTTGCACCC
ACGCTTATCTACGAGACAGCTACCCGGCGCACCTCCCACATCCGCTGAAG
TTTGCCCTGAATCGACTGTTGGAGGTGGTGGCCATAGCTTCTGTACGCGT
TCATCCATGGACGTCATCCACGAGCACTTCGGACAGTACGACTGACATGG
GACCTTCCAAGCTGTATTCTCAAGCGTTCGCATGAGTCTGCCAGCGGGGT
ATCT
UFO06378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8112-RB | 1956 | CG8112-RB | 187..1349 | 6..1150 | 5150 | 97.2 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 2038..2691 | 659..6 | 3270 | 100 | Minus |
| CG8112-RD | 2129 | CG8112-RD | 187..840 | 6..659 | 3270 | 100 | Plus |
| Cks85A-RC | 2904 | CG9790-RC | 1154..1664 | 1150..658 | 1890 | 93.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8713119..8713772 | 6..659 | 3270 | 100 | Plus |
| 3R | 32079331 | 3R | 8714146..8714589 | 658..1090 | 1610 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:07 has no hits.
UFO06378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:55 Download gff for
UFO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RA | 321..1428 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:44 Download gff for
UFO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1292 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:46 Download gff for
UFO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8112-RB | 185..1292 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:46 Download gff for
UFO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8713117..8713770 | 1..657 | 99 | -> | Plus |
| 3R | 8714146..8714629 | 658..1126 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:44 Download gff for
UFO06378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4538839..4539492 | 1..657 | 99 | -> | Plus |
| arm_3R | 4539868..4540351 | 658..1126 | 94 | -> | Plus |
